Analysis of interatomic Contacts of Structural Units in PDB entry:
1Z5W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Z5W entry

There is 1 chain in PDB entry 1Z5W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2ARG 440
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 1Z5W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 29Right-handed alpha
Helix 2
2
A
70 79Right-handed alpha
Helix 3
3
A
87 89Right-handed 310
Helix 4
4
A
103 129Right-handed alpha
Helix 5
5
A
144 161Right-handed alpha
Helix 6
6
A
183 198Right-handed alpha
Helix 7
7
A
207 216Right-handed alpha
Helix 8
8
A
224 239Right-handed alpha
Helix 9
9
A
240 245Right-handed alpha
Helix 10
10
A
252 261Right-handed alpha
Helix 11
11
A
289 297Right-handed alpha
Helix 12
12
A
298 303Right-handed 310
Helix 13
13
A
329 344Right-handed alpha
Helix 14
14
A
384 400Right-handed alpha
Helix 15
15
A
404 409Right-handed alpha
Helix 16
16
A
416 435Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1Z5W. Click on sheet of interest to get list of strands forming it: A, B,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 93first strand
Strand 2
A
64 68parallel
Strand 3
A
4 10parallel
Strand 4
A
132 140parallel
Strand 5
A
165 172parallel
Strand 6
A
201 206parallel
Strand 7
A
268 273parallel
Strand 8
A
375 381anti-parallel
Strand 9
A
317 325anti-parallel
Strand 10
A
356 361parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 54first strand
Strand 2
A
60 62anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il