Analysis of interatomic Contacts of Structural Units in PDB entry:
1Z84


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Z84 entry

There are 2 chains in PDB entry 1Z84 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 22THR 351
B
 GLN 21LEU 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 1Z84. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 48Right-handed 310
Helix 2
2
A
69 73Right-handed 310
Helix 3
3
A
100 104Right-handed 310
Helix 4
4
A
136 140Right-handed 310
Helix 5
5
A
141 160Right-handed alpha
Helix 6
6
A
175 179Right-handed 310
Helix 7
7
A
196 214Right-handed alpha
Helix 8
8
A
220 225Right-handed alpha
Helix 9
9
A
258 262Right-handed 310
Helix 10
10
A
263 285Right-handed alpha
Helix 11
11
A
302 309Right-handed 310
Helix 12
12
A
323 330Right-handed alpha
Helix 13
13
A
337 348Right-handed alpha
Helix 14
14
B
69 73Right-handed 310
Helix 15
15
B
100 104Right-handed 310
Helix 16
16
B
136 140Right-handed 310
Helix 17
17
B
141 160Right-handed alpha
Helix 18
18
B
175 179Right-handed 310
Helix 19
19
B
196 214Right-handed alpha
Helix 20
20
B
220 225Right-handed alpha
Helix 21
21
B
258 262Right-handed 310
Helix 22
22
B
263 285Right-handed alpha
Helix 23
23
B
302 309Right-handed 310
Helix 24
24
B
323 330Right-handed alpha
Helix 25
25
B
337 347Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1Z84. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 334first strand
Strand 2
A
33 37parallel
Strand 3
A
24 28anti-parallel
Strand 4
B
117 119anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 80first strand
Strand 2
A
89 93anti-parallel
Strand 3
A
123 128anti-parallel
Strand 4
A
186 192anti-parallel
Strand 5
A
167 174anti-parallel
Strand 6
A
290 295anti-parallel
Strand 7
A
312 317anti-parallel
Strand 8
A
248 252anti-parallel
Strand 9
A
234 238anti-parallel
Strand 10
A
226 230anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 119first strand
Strand 2
B
24 28anti-parallel
Strand 3
B
33 37anti-parallel
Strand 4
B
333 334parallel
Back to list of sheets
Back to top of page

There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 80first strand
Strand 2
B
89 93anti-parallel
Strand 3
B
123 128anti-parallel
Strand 4
B
186 192anti-parallel
Strand 5
B
167 174anti-parallel
Strand 6
B
290 295anti-parallel
Strand 7
B
312 317anti-parallel
Strand 8
B
248 252anti-parallel
Strand 9
B
234 238anti-parallel
Strand 10
B
226 230anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il