Analysis of interatomic Contacts of Structural Units in PDB entry:
1Z8G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Z8G entry

There are 2 chains in PDB entry 1Z8G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 49LEU 417
L
 LYS 2LEU 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 1Z8G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
81 94Right-handed alpha
Helix 2
2
A
106 110Right-handed alpha
Helix 3
3
A
124 128Right-handed 310
Helix 4
4
A
130 133Right-handed 310
Helix 5
5
A
201 205Right-handed 310
Helix 6
6
A
206 210Right-handed 310
Helix 7
7
A
211 213Right-handed 310
Helix 8
8
A
243 247Right-handed 310
Helix 9
9
A
318 323Right-handed alpha
Helix 10
10
A
396 407Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 1Z8G. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 56first strand
Strand 2
A
63 67anti-parallel
Strand 3
A
72 76anti-parallel
Strand 4
A
117 120parallel
Strand 5
A
135 138anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 105first strand
Strand 2
A
144 150anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 168first strand
Strand 2
A
310 317anti-parallel
Strand 3
A
290 295anti-parallel
Strand 4
A
356 361anti-parallel
Strand 5
A
368 378anti-parallel
Strand 6
L
3 4anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 168first strand
Strand 2
A
310 317anti-parallel
Strand 3
A
336 339anti-parallel
Strand 4
A
388 392anti-parallel
Strand 5
A
368 378anti-parallel
Strand 6
L
3 4anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 232first strand
Strand 2
A
215 219anti-parallel
Strand 3
A
177 182anti-parallel
Strand 4
A
185 192anti-parallel
Strand 5
A
197 200anti-parallel
Strand 6
A
259 263anti-parallel
Strand 7
A
234 240anti-parallel
Strand 8
A
412 416parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il