Analysis of interatomic Contacts of Structural Units in PDB entry:
1Z8T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Z8T entry

There are 4 chains in PDB entry 1Z8T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 208
B
 MET 1LEU 208
C
 MET 1LEU 208
D
 MET 1LEU 208
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1Z8T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 27Right-handed alpha
Helix 2
2
A
46 60Right-handed alpha
Helix 3
3
A
116 127Right-handed alpha
Helix 4
4
A
140 157Right-handed alpha
Helix 5
5
A
170 173Right-handed 310
Helix 6
6
A
174 180Right-handed alpha
Helix 7
7
A
188 207Right-handed alpha
Helix 8
8
B
17 27Right-handed alpha
Helix 9
9
B
46 60Right-handed alpha
Helix 10
10
B
116 127Right-handed alpha
Helix 11
11
B
140 157Right-handed alpha
Helix 12
12
B
170 173Right-handed 310
Helix 13
13
B
174 180Right-handed alpha
Helix 14
14
B
188 207Right-handed alpha
Helix 15
15
C
17 27Right-handed alpha
Helix 16
16
C
46 60Right-handed alpha
Helix 17
17
C
116 127Right-handed alpha
Helix 18
18
C
140 157Right-handed alpha
Helix 19
19
C
170 173Right-handed 310
Helix 20
20
C
174 180Right-handed alpha
Helix 21
21
C
188 207Right-handed alpha
Helix 22
22
D
17 27Right-handed alpha
Helix 23
23
D
46 60Right-handed alpha
Helix 24
24
D
116 127Right-handed alpha
Helix 25
25
D
140 157Right-handed alpha
Helix 26
26
D
170 173Right-handed 310
Helix 27
27
D
174 180Right-handed alpha
Helix 28
28
D
188 207Right-handed alpha
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There are 8 sheets in PDB entry 1Z8T. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
34 41anti-parallel
Strand 3
A
2 8parallel
Strand 4
A
63 69parallel
Strand 5
A
161 167parallel
Strand 6
A
76 79anti-parallel
Strand 7
A
131 134parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
A
110 112anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 31first strand
Strand 2
B
34 41anti-parallel
Strand 3
B
2 8parallel
Strand 4
B
63 69parallel
Strand 5
B
161 167parallel
Strand 6
B
76 79anti-parallel
Strand 7
B
131 134parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 83first strand
Strand 2
B
110 112anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 31first strand
Strand 2
C
34 41anti-parallel
Strand 3
C
2 8parallel
Strand 4
C
63 69parallel
Strand 5
C
161 167parallel
Strand 6
C
76 79anti-parallel
Strand 7
C
131 134parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
81 83first strand
Strand 2
C
110 112anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
30 31first strand
Strand 2
D
34 41anti-parallel
Strand 3
D
2 8parallel
Strand 4
D
63 69parallel
Strand 5
D
161 167parallel
Strand 6
D
76 79anti-parallel
Strand 7
D
131 134parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
81 83first strand
Strand 2
D
110 112anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il