Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 1ZAA entry
There are 3 chains in PDB entry 1ZAA
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
A 1 | T 11 |
B
|
T 1 | C 11 |
C
|
ARG 3 | ARG 87 |
Back to top of page
There are 3
helices in PDB entry 1ZAA. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
A1 | C
| 19 |
30 | Right-handed alpha |
Helix 2 |
A2 | C
| 47 |
58 | Right-handed alpha |
Helix 3 |
A3 | C
| 75 |
85 | Right-handed alpha |
Back to top of page
There are
3 sheets in PDB entry 1ZAA. Click on sheet of
interest to get list of strands forming it:
AB1,
AB2,
AB3,
There are 2
strands in AB1 sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
C
| 5 |
7 | first strand |
Strand 2 |
C
| 14 |
16 | parallel |
Back to list of sheets
Back to top of page
There are 2
strands in AB2 sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
C
| 35 |
37 | first strand |
Strand 2 |
C
| 42 |
44 | anti-parallel |
Back to list of sheets
Back to top of page
There are 2
strands in AB3 sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
C
| 63 |
65 | first strand |
Strand 2 |
C
| 70 |
72 | anti-parallel |
Back to list of sheets
Back to top of page
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il