Analysis of interatomic Contacts of Structural Units in PDB entry:
1ZJ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1ZJ8 entry

There are 2 chains in PDB entry 1ZJ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 10ARG 555
B
 ARG 10ARG 555
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 1ZJ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 18Right-handed 310
Helix 2
2
A
24 30Right-handed alpha
Helix 3
3
A
31 33Right-handed 310
Helix 4
4
A
34 36Right-handed 310
Helix 5
5
A
37 45Right-handed alpha
Helix 6
6
A
45 50Right-handed alpha
Helix 7
7
A
51 54Right-handed 310
Helix 8
8
A
55 61Right-handed alpha
Helix 9
9
A
62 66Right-handed 310
Helix 10
10
A
77 81Right-handed 310
Helix 11
11
A
82 84Right-handed 310
Helix 12
12
A
85 89Right-handed alpha
Helix 13
13
A
100 102Right-handed 310
Helix 14
14
A
106 121Right-handed alpha
Helix 15
15
A
139 141Right-handed 310
Helix 16
16
A
142 152Right-handed alpha
Helix 17
17
A
184 196Right-handed alpha
Helix 18
18
A
198 202Right-handed 310
Helix 19
19
A
219 223Right-handed 310
Helix 20
20
A
262 264Right-handed 310
Helix 21
21
A
265 281Right-handed alpha
Helix 22
22
A
285 289Right-handed 310
Helix 23
23
A
290 299Right-handed alpha
Helix 24
24
A
299 311Right-handed alpha
Helix 25
25
A
355 369Right-handed alpha
Helix 26
26
A
387 401Right-handed alpha
Helix 27
27
A
408 413Right-handed alpha
Helix 28
28
A
418 422Right-handed 310
Helix 29
29
A
430 445Right-handed alpha
Helix 30
30
A
445 450Right-handed alpha
Helix 31
31
A
469 473Right-handed 310
Helix 32
32
A
520 535Right-handed alpha
Helix 33
33
A
541 549Right-handed alpha
Helix 34
34
A
550 555Right-handed 310
Helix 35
35
B
14 18Right-handed 310
Helix 36
36
B
24 30Right-handed alpha
Helix 37
37
B
31 33Right-handed 310
Helix 38
38
B
34 36Right-handed 310
Helix 39
39
B
37 45Right-handed alpha
Helix 40
40
B
45 50Right-handed alpha
Helix 41
41
B
51 54Right-handed 310
Helix 42
42
B
55 60Right-handed alpha
Helix 43
43
B
61 66Right-handed 310
Helix 44
44
B
82 84Right-handed 310
Helix 45
45
B
85 89Right-handed alpha
Helix 46
46
B
100 102Right-handed 310
Helix 47
47
B
106 121Right-handed alpha
Helix 48
48
B
139 141Right-handed 310
Helix 49
49
B
142 152Right-handed alpha
Helix 50
50
B
184 196Right-handed alpha
Helix 51
51
B
198 202Right-handed 310
Helix 52
52
B
219 223Right-handed 310
Helix 53
53
B
262 264Right-handed 310
Helix 54
54
B
265 281Right-handed alpha
Helix 55
55
B
285 289Right-handed 310
Helix 56
56
B
290 299Right-handed alpha
Helix 57
57
B
299 311Right-handed alpha
Helix 58
58
B
355 368Right-handed alpha
Helix 59
59
B
387 401Right-handed alpha
Helix 60
60
B
408 413Right-handed alpha
Helix 61
61
B
430 445Right-handed alpha
Helix 62
62
B
445 450Right-handed alpha
Helix 63
63
B
469 473Right-handed 310
Helix 64
64
B
520 535Right-handed alpha
Helix 65
65
B
541 549Right-handed alpha
Helix 66
66
B
550 555Right-handed 310
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There are 10 sheets in PDB entry 1ZJ8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 72first strand
Strand 2
A
90 98anti-parallel
Strand 3
A
133 138anti-parallel
Strand 4
A
124 127anti-parallel
Strand 5
A
352 354anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 105first strand
Strand 2
A
373 375anti-parallel
Strand 3
A
381 386anti-parallel
Strand 4
A
342 346anti-parallel
Strand 5
A
333 336anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 170first strand
Strand 2
A
208 213parallel
Strand 3
A
225 232parallel
Strand 4
A
236 243anti-parallel
Strand 5
A
255 261anti-parallel
Strand 6
A
317 318anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 416first strand
Strand 2
A
458 461parallel
Strand 3
A
475 483parallel
Strand 4
A
489 497anti-parallel
Strand 5
A
509 510anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 416first strand
Strand 2
A
458 461parallel
Strand 3
A
475 483parallel
Strand 4
A
489 497anti-parallel
Strand 5
A
516 517anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 72first strand
Strand 2
B
90 98anti-parallel
Strand 3
B
133 138anti-parallel
Strand 4
B
124 127anti-parallel
Strand 5
B
352 354anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 105first strand
Strand 2
B
373 375anti-parallel
Strand 3
B
381 386anti-parallel
Strand 4
B
342 346anti-parallel
Strand 5
B
333 336anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 170first strand
Strand 2
B
208 213parallel
Strand 3
B
225 232parallel
Strand 4
B
236 243anti-parallel
Strand 5
B
255 261anti-parallel
Strand 6
B
317 318anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
414 416first strand
Strand 2
B
458 461parallel
Strand 3
B
475 483parallel
Strand 4
B
489 497anti-parallel
Strand 5
B
509 510anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
414 416first strand
Strand 2
B
458 461parallel
Strand 3
B
475 483parallel
Strand 4
B
489 497anti-parallel
Strand 5
B
516 517anti-parallel
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