Analysis of interatomic Contacts of Structural Units in PDB entry:
1ZJ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1ZJ9 entry

There are 2 chains in PDB entry 1ZJ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 10ARG 555
B
 ARG 10ARG 555
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 60 helices in PDB entry 1ZJ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 18Right-handed 310
Helix 2
2
A
24 31Right-handed alpha
Helix 3
3
A
34 36Right-handed 310
Helix 4
4
A
37 45Right-handed alpha
Helix 5
5
A
45 50Right-handed alpha
Helix 6
6
A
51 54Right-handed 310
Helix 7
7
A
55 61Right-handed alpha
Helix 8
8
A
62 66Right-handed 310
Helix 9
9
A
77 81Right-handed 310
Helix 10
10
A
82 84Right-handed 310
Helix 11
11
A
85 89Right-handed alpha
Helix 12
12
A
106 121Right-handed alpha
Helix 13
13
A
139 141Right-handed 310
Helix 14
14
A
142 152Right-handed alpha
Helix 15
15
A
184 196Right-handed alpha
Helix 16
16
A
198 202Right-handed 310
Helix 17
17
A
219 223Right-handed 310
Helix 18
18
A
262 264Right-handed 310
Helix 19
19
A
265 281Right-handed alpha
Helix 20
20
A
285 289Right-handed 310
Helix 21
21
A
290 299Right-handed alpha
Helix 22
22
A
299 311Right-handed alpha
Helix 23
23
A
355 369Right-handed alpha
Helix 24
24
A
387 390Right-handed 310
Helix 25
25
A
391 400Right-handed alpha
Helix 26
26
A
408 413Right-handed alpha
Helix 27
27
A
418 422Right-handed 310
Helix 28
28
A
430 446Right-handed alpha
Helix 29
29
A
448 452Right-handed 310
Helix 30
30
A
469 473Right-handed 310
Helix 31
31
A
520 536Right-handed alpha
Helix 32
32
A
541 549Right-handed alpha
Helix 33
33
A
550 555Right-handed 310
Helix 34
34
B
14 18Right-handed 310
Helix 35
35
B
24 32Right-handed alpha
Helix 36
36
B
34 36Right-handed 310
Helix 37
37
B
37 45Right-handed alpha
Helix 38
38
B
45 50Right-handed alpha
Helix 39
39
B
61 66Right-handed 310
Helix 40
40
B
77 81Right-handed 310
Helix 41
41
B
85 89Right-handed alpha
Helix 42
42
B
100 102Right-handed 310
Helix 43
43
B
106 121Right-handed alpha
Helix 44
44
B
139 141Right-handed 310
Helix 45
45
B
142 152Right-handed alpha
Helix 46
46
B
184 196Right-handed alpha
Helix 47
47
B
198 202Right-handed 310
Helix 48
48
B
219 223Right-handed 310
Helix 49
49
B
262 264Right-handed 310
Helix 50
50
B
265 281Right-handed alpha
Helix 51
51
B
290 311Right-handed alpha
Helix 52
52
B
355 368Right-handed alpha
Helix 53
53
B
387 401Right-handed alpha
Helix 54
54
B
408 413Right-handed alpha
Helix 55
55
B
418 422Right-handed 310
Helix 56
56
B
430 445Right-handed alpha
Helix 57
57
B
446 452Right-handed 310
Helix 58
58
B
519 535Right-handed alpha
Helix 59
59
B
541 549Right-handed alpha
Helix 60
60
B
550 555Right-handed 310
Back to top of page

There are 9 sheets in PDB entry 1ZJ9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 72first strand
Strand 2
A
90 98anti-parallel
Strand 3
A
133 138anti-parallel
Strand 4
A
124 127anti-parallel
Strand 5
A
352 354anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 105first strand
Strand 2
A
373 375anti-parallel
Strand 3
A
381 386anti-parallel
Strand 4
A
342 346anti-parallel
Strand 5
A
333 336anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 169first strand
Strand 2
A
208 213parallel
Strand 3
A
225 232parallel
Strand 4
A
236 243anti-parallel
Strand 5
A
255 261anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 416first strand
Strand 2
A
458 461parallel
Strand 3
A
475 483parallel
Strand 4
A
489 497anti-parallel
Strand 5
A
509 510anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 416first strand
Strand 2
A
458 461parallel
Strand 3
A
475 483parallel
Strand 4
A
489 497anti-parallel
Strand 5
A
516 517anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 72first strand
Strand 2
B
90 98anti-parallel
Strand 3
B
132 138anti-parallel
Strand 4
B
124 128anti-parallel
Strand 5
B
352 354anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 105first strand
Strand 2
B
373 375anti-parallel
Strand 3
B
381 386anti-parallel
Strand 4
B
342 346anti-parallel
Strand 5
B
333 336anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 169first strand
Strand 2
B
208 213parallel
Strand 3
B
225 232parallel
Strand 4
B
236 243anti-parallel
Strand 5
B
255 261anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
414 416first strand
Strand 2
B
458 461parallel
Strand 3
B
475 483parallel
Strand 4
B
489 497anti-parallel
Strand 5
B
509 517anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il