Analysis of interatomic Contacts of Structural Units in PDB entry:
1ZMR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1ZMR entry

There is 1 chain in PDB entry 1ZMR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LYS 387
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 1ZMR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 9Right-handed 310
Helix 2
2
A
34 50Right-handed alpha
Helix 3
3
A
69 73Right-handed 310
Helix 4
4
A
74 85Right-handed alpha
Helix 5
5
A
111 115Right-handed 310
Helix 6
6
A
122 132Right-handed alpha
Helix 7
7
A
140 144Right-handed 310
Helix 8
8
A
153 158Right-handed alpha
Helix 9
9
A
164 179Right-handed alpha
Helix 10
10
A
197 206Right-handed alpha
Helix 11
11
A
216 225Right-handed alpha
Helix 12
12
A
235 237Right-handed 310
Helix 13
13
A
238 247Right-handed alpha
Helix 14
14
A
275 277Right-handed 310
Helix 15
15
A
287 301Right-handed alpha
Helix 16
16
A
315 318Right-handed 310
Helix 17
17
A
319 332Right-handed alpha
Helix 18
18
A
340 351Right-handed alpha
Helix 19
19
A
352 356Right-handed 310
Helix 20
20
A
363 371Right-handed alpha
Helix 21
21
A
375 385Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1ZMR. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 92first strand
Strand 2
A
106 109parallel
Strand 3
A
53 57parallel
Strand 4
A
15 19parallel
Strand 5
A
135 138parallel
Strand 6
A
160 163parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
30 31anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 215first strand
Strand 2
A
185 191parallel
Strand 3
A
303 307parallel
Strand 4
A
335 338parallel
Strand 5
A
358 359parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 273first strand
Strand 2
A
256 260anti-parallel
Strand 3
A
282 286anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il