Analysis of interatomic Contacts of Structural Units in PDB entry:
1ZPD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1ZPD entry

There are 4 chains in PDB entry 1ZPD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LYS 566
B
 SER 2LYS 566
E
 SER 2LYS 566
F
 SER 2LYS 566
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are103 helices in PDB entry 1ZPD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 16Right-handed alpha
Helix 2
2
A
27 38Right-handed 310
Helix 3
3
A
50 64Right-handed alpha
Helix 4
4
A
77 89Right-handed alpha
Helix 5
5
A
103 105Right-handed 310
Helix 6
6
A
123 131Right-handed alpha
Helix 7
7
A
141 158Right-handed 310
Helix 8
8
A
168 170Right-handed 310
Helix 9
9
A
181 185Right-handed 310
Helix 10
10
A
192 206Right-handed alpha
Helix 11
11
A
226 236Right-handed alpha
Helix 12
12
A
244 246Right-handed 310
Helix 13
13
A
263 265Right-handed 310
Helix 14
14
A
270 276Right-handed alpha
Helix 15
15
A
301 303Right-handed 310
Helix 16
16
A
324 334Right-handed alpha
Helix 17
17
A
340 348Right-handed alpha
Helix 18
18
A
367 377Right-handed alpha
Helix 19
19
A
390 397Right-handed alpha
Helix 20
20
A
417 428Right-handed alpha
Helix 21
21
A
440 455Right-handed alpha
Helix 22
22
A
471 476Right-handed alpha
Helix 23
23
A
480 482Right-handed 310
Helix 24
24
A
489 497Right-handed alpha
Helix 25
25
A
515 527Right-handed alpha
Helix 26
26
A
546 560Right-handed alpha
Helix 27
27
B
5 15Right-handed alpha
Helix 28
28
B
30 38Right-handed alpha
Helix 29
29
B
50 64Right-handed alpha
Helix 30
30
B
77 89Right-handed alpha
Helix 31
31
B
103 105Right-handed 310
Helix 32
32
B
123 130Right-handed alpha
Helix 33
33
B
141 158Right-handed 310
Helix 34
34
B
168 170Right-handed 310
Helix 35
35
B
181 185Right-handed 310
Helix 36
36
B
192 206Right-handed alpha
Helix 37
37
B
226 236Right-handed alpha
Helix 38
38
B
244 246Right-handed 310
Helix 39
39
B
263 265Right-handed 310
Helix 40
40
B
270 276Right-handed alpha
Helix 41
41
B
324 334Right-handed alpha
Helix 42
42
B
340 348Right-handed alpha
Helix 43
43
B
367 377Right-handed alpha
Helix 44
44
B
390 397Right-handed alpha
Helix 45
45
B
417 428Right-handed alpha
Helix 46
46
B
440 455Right-handed alpha
Helix 47
47
B
471 474Right-handed alpha
Helix 48
48
B
480 482Right-handed 310
Helix 49
49
B
489 497Right-handed alpha
Helix 50
50
B
515 527Right-handed alpha
Helix 51
51
B
546 560Right-handed alpha
Helix 52
52
E
5 16Right-handed alpha
Helix 53
53
E
27 38Right-handed 310
Helix 54
54
E
50 64Right-handed alpha
Helix 55
55
E
77 89Right-handed alpha
Helix 56
56
E
103 105Right-handed 310
Helix 57
57
E
123 130Right-handed alpha
Helix 58
58
E
141 158Right-handed 310
Helix 59
59
E
168 170Right-handed 310
Helix 60
60
E
181 185Right-handed 310
Helix 61
61
E
192 206Right-handed alpha
Helix 62
62
E
226 236Right-handed alpha
Helix 63
63
E
244 246Right-handed 310
Helix 64
64
E
263 265Right-handed 310
Helix 65
65
E
270 276Right-handed alpha
Helix 66
66
E
301 303Right-handed 310
Helix 67
67
E
324 334Right-handed alpha
Helix 68
68
E
340 348Right-handed alpha
Helix 69
69
E
367 377Right-handed alpha
Helix 70
70
E
390 397Right-handed alpha
Helix 71
71
E
417 428Right-handed alpha
Helix 72
72
E
440 455Right-handed alpha
Helix 73
73
E
471 476Right-handed alpha
Helix 74
74
E
480 482Right-handed 310
Helix 75
75
E
489 497Right-handed alpha
Helix 76
76
E
515 527Right-handed alpha
Helix 77
77
E
546 560Right-handed alpha
Helix 78
78
F
5 15Right-handed alpha
Helix 79
79
F
27 38Right-handed 310
Helix 80
80
F
50 64Right-handed alpha
Helix 81
81
F
77 89Right-handed alpha
Helix 82
82
F
103 105Right-handed 310
Helix 83
83
F
123 130Right-handed alpha
Helix 84
84
F
141 158Right-handed 310
Helix 85
85
F
168 170Right-handed 310
Helix 86
86
F
181 185Right-handed 310
Helix 87
87
F
192 206Right-handed alpha
Helix 88
88
F
226 236Right-handed alpha
Helix 89
89
F
244 246Right-handed 310
Helix 90
90
F
263 265Right-handed 310
Helix 91
91
F
270 276Right-handed alpha
Helix 92
92
F
301 303Right-handed 310
Helix 93
93
F
324 334Right-handed alpha
Helix 94
94
F
340 348Right-handed alpha
Helix 95
95
F
367 377Right-handed alpha
Helix 96
96
F
390 397Right-handed alpha
Helix 97
97
F
417 428Right-handed alpha
Helix 98
98
F
440 455Right-handed alpha
Helix 99
99
F
471 476Right-handed alpha
Helix 100
100
F
480 482Right-handed 310
Helix 101
101
F
489 497Right-handed alpha
Helix 102
102
F
515 527Right-handed alpha
Helix 103
103
F
546 560Right-handed alpha
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There are 20 sheets in PDB entry 1ZPD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 23first strand
Strand 2
A
43 46parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 71first strand
Strand 2
A
93 100parallel
Strand 3
A
162 167parallel
Strand 4
A
135 138parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 261first strand
Strand 2
A
240 243parallel
Strand 3
A
212 216parallel
Strand 4
A
279 283parallel
Strand 5
A
304 307parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 314first strand
Strand 2
A
317 320anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 408first strand
Strand 2
A
382 386parallel
Strand 3
A
433 439parallel
Strand 4
A
461 466parallel
Strand 5
A
533 538parallel
Strand 6
A
508 512parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 23first strand
Strand 2
B
43 46parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 71first strand
Strand 2
B
93 100parallel
Strand 3
B
162 167parallel
Strand 4
B
134 138parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
257 261first strand
Strand 2
B
240 243parallel
Strand 3
B
212 216parallel
Strand 4
B
279 283parallel
Strand 5
B
304 307parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
311 314first strand
Strand 2
B
317 320anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
405 408first strand
Strand 2
B
382 386parallel
Strand 3
B
433 439parallel
Strand 4
B
461 466parallel
Strand 5
B
533 538parallel
Strand 6
B
508 512parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
20 23first strand
Strand 2
E
43 46parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
66 71first strand
Strand 2
E
93 100parallel
Strand 3
E
162 167parallel
Strand 4
E
134 138parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
257 261first strand
Strand 2
E
240 243parallel
Strand 3
E
212 216parallel
Strand 4
E
279 283parallel
Strand 5
E
304 307parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
311 314first strand
Strand 2
E
317 320anti-parallel
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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
405 408first strand
Strand 2
E
382 386parallel
Strand 3
E
433 439parallel
Strand 4
E
461 466parallel
Strand 5
E
533 538parallel
Strand 6
E
508 512parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
20 23first strand
Strand 2
F
43 46parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
66 71first strand
Strand 2
F
93 100parallel
Strand 3
F
162 167parallel
Strand 4
F
134 138parallel
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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
257 261first strand
Strand 2
F
240 243parallel
Strand 3
F
212 216parallel
Strand 4
F
279 283parallel
Strand 5
F
304 307parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
311 314first strand
Strand 2
F
317 320anti-parallel
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There are 6 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
405 408first strand
Strand 2
F
382 386parallel
Strand 3
F
433 439parallel
Strand 4
F
461 466parallel
Strand 5
F
533 538parallel
Strand 6
F
508 512parallel
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