Analysis of interatomic Contacts of Structural Units in PDB entry:
1ZQF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1ZQF entry

There are 3 chains in PDB entry 1ZQF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
T
 C 1 A 8
P
 T 1 G 7
A
 GLU 9GLU 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1ZQF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A
A
13 28Right-handed alpha
Helix 2
B
A
33 48Right-handed alpha
Helix 3
C
A
55 61Right-handed alpha
Helix 4
D
A
67 79Right-handed alpha
Helix 5
E
A
83 90Right-handed alpha
Helix 6
F
A
92 102Right-handed alpha
Helix 7
G
A
108 118Right-handed alpha
Helix 8
H
A
122 131Right-handed alpha
Helix 9
I
A
134 147Right-handed alpha
Helix 10
J
A
152 169Right-handed alpha
Helix 11
K
A
179 184Right-handed alpha
Helix 12
L
A
208 220Right-handed 310
Helix 13
M
A
262 273Right-handed 310
Helix 14
N
A
276 288Right-handed alpha
Helix 15
O
A
316 323Right-handed alpha
Helix 16
P
A
330 332Right-handed 310
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There are 2 sheets in PDB entry 1ZQF. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 178first strand
Strand 2
A
191 196anti-parallel
Strand 3
A
253 258parallel
Strand 4
A
234 239anti-parallel
Strand 5
A
224 227anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 294first strand
Strand 2
A
297 300anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il