Analysis of interatomic Contacts of Structural Units in PDB entry:
1ZUP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1ZUP entry

There are 2 chains in PDB entry 1ZUP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -1ILE 301
B
 ARG 4GLY 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 1ZUP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
127 146Right-handed alpha
Helix 2
2
A
147 151Right-handed 310
Helix 3
3
A
185 192Right-handed alpha
Helix 4
4
A
193 195Right-handed 310
Helix 5
5
A
239 241Right-handed 310
Helix 6
6
A
242 257Right-handed alpha
Helix 7
7
A
258 261Right-handed 310
Helix 8
8
A
273 286Right-handed alpha
Helix 9
9
A
289 301Right-handed alpha
Helix 10
10
B
127 146Right-handed alpha
Helix 11
11
B
147 151Right-handed 310
Helix 12
12
B
185 193Right-handed alpha
Helix 13
13
B
242 257Right-handed alpha
Helix 14
14
B
258 261Right-handed 310
Helix 15
15
B
273 285Right-handed alpha
Helix 16
16
B
289 299Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1ZUP. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 10first strand
Strand 2
B
44 60anti-parallel
Strand 3
B
65 79anti-parallel
Strand 4
B
95 102anti-parallel
Strand 5
B
117 122parallel
Strand 6
B
111 114anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 86first strand
Strand 2
B
65 79anti-parallel
Strand 3
B
44 60anti-parallel
Strand 4
B
153 157parallel
Strand 5
B
173 176parallel
Strand 6
B
230 235anti-parallel
Strand 7
B
215 220anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 86first strand
Strand 2
A
65 79anti-parallel
Strand 3
A
44 60anti-parallel
Strand 4
A
154 157parallel
Strand 5
A
173 176parallel
Strand 6
A
230 237anti-parallel
Strand 7
A
213 220anti-parallel
Strand 8
A
204 205anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 114first strand
Strand 2
A
117 122anti-parallel
Strand 3
A
95 101parallel
Strand 4
A
65 79anti-parallel
Strand 5
A
44 60anti-parallel
Strand 6
B
5 10anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il