Analysis of interatomic Contacts of Structural Units in PDB entry:
1ZVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1ZVD entry

There is 1 chain in PDB entry 1ZVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 369GLU 741
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 1ZVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
371 379Right-handed alpha
Helix 2
2
A
381 387Right-handed alpha
Helix 3
3
A
401 411Right-handed alpha
Helix 4
4
A
412 413Right-handed 310
Helix 5
5
A
414 420Right-handed 310
Helix 6
6
A
433 450Right-handed alpha
Helix 7
7
A
451 455Right-handed 310
Helix 8
8
A
472 476Right-handed 310
Helix 9
9
A
478 496Right-handed alpha
Helix 10
10
A
505 513Right-handed alpha
Helix 11
11
A
521 526Right-handed alpha
Helix 12
12
A
526 539Right-handed alpha
Helix 13
13
A
577 591Right-handed alpha
Helix 14
14
A
594 609Right-handed alpha
Helix 15
15
A
610 615Right-handed 310
Helix 16
16
A
618 628Right-handed alpha
Helix 17
17
A
633 640Right-handed alpha
Helix 18
18
A
650 663Right-handed alpha
Helix 19
19
A
664 677Right-handed alpha
Helix 20
20
A
685 688Right-handed 310
Helix 21
21
A
715 717Right-handed 310
Helix 22
22
A
727 740Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 1ZVD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 397first strand
Strand 2
A
421 426parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 460first strand
Strand 2
A
463 469anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
550 551first strand
Strand 2
A
562 563anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
641 642first strand
Strand 2
A
698 702parallel
Strand 3
A
719 722parallel
Strand 4
A
712 714anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
690 691first strand
Strand 2
A
694 695anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il