Analysis of interatomic Contacts of Structural Units in PDB entry:
1ZVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1ZVM entry

There are 4 chains in PDB entry 1ZVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 46THR 297
B
 TRP 46THR 297
C
 TRP 46SER 298
D
 TRP 46THR 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 1ZVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
58 74Right-handed alpha
Helix 2
2
A
75 78Right-handed 310
Helix 3
3
A
81 94Right-handed alpha
Helix 4
4
A
103 105Right-handed 310
Helix 5
5
A
106 113Right-handed alpha
Helix 6
6
A
128 139Right-handed alpha
Helix 7
7
A
144 147Right-handed 310
Helix 8
8
A
148 155Right-handed alpha
Helix 9
9
A
183 200Right-handed alpha
Helix 10
10
A
220 225Right-handed alpha
Helix 11
11
A
226 230Right-handed 310
Helix 12
12
A
252 255Right-handed 310
Helix 13
13
A
256 268Right-handed alpha
Helix 14
14
A
280 290Right-handed alpha
Helix 15
15
B
58 74Right-handed alpha
Helix 16
16
B
75 78Right-handed 310
Helix 17
17
B
81 94Right-handed alpha
Helix 18
18
B
103 105Right-handed 310
Helix 19
19
B
106 113Right-handed alpha
Helix 20
20
B
128 139Right-handed alpha
Helix 21
21
B
144 147Right-handed 310
Helix 22
22
B
148 155Right-handed alpha
Helix 23
23
B
183 200Right-handed alpha
Helix 24
24
B
220 225Right-handed alpha
Helix 25
25
B
226 230Right-handed 310
Helix 26
26
B
252 255Right-handed 310
Helix 27
27
B
256 268Right-handed alpha
Helix 28
28
B
280 290Right-handed alpha
Helix 29
29
C
58 74Right-handed alpha
Helix 30
30
C
75 78Right-handed 310
Helix 31
31
C
81 94Right-handed alpha
Helix 32
32
C
102 105Right-handed 310
Helix 33
33
C
106 113Right-handed alpha
Helix 34
34
C
118 121Right-handed 310
Helix 35
35
C
128 139Right-handed alpha
Helix 36
36
C
144 147Right-handed 310
Helix 37
37
C
148 155Right-handed alpha
Helix 38
38
C
183 200Right-handed alpha
Helix 39
39
C
220 225Right-handed alpha
Helix 40
40
C
226 230Right-handed 310
Helix 41
41
C
252 255Right-handed 310
Helix 42
42
C
256 269Right-handed alpha
Helix 43
43
C
280 290Right-handed alpha
Helix 44
44
D
58 74Right-handed alpha
Helix 45
45
D
75 78Right-handed 310
Helix 46
46
D
81 92Right-handed alpha
Helix 47
47
D
103 105Right-handed 310
Helix 48
48
D
106 114Right-handed alpha
Helix 49
49
D
118 121Right-handed 310
Helix 50
50
D
128 139Right-handed alpha
Helix 51
51
D
144 147Right-handed 310
Helix 52
52
D
148 155Right-handed alpha
Helix 53
53
D
183 199Right-handed alpha
Helix 54
54
D
220 225Right-handed alpha
Helix 55
55
D
226 230Right-handed 310
Helix 56
56
D
252 255Right-handed 310
Helix 57
57
D
256 268Right-handed alpha
Helix 58
58
D
280 290Right-handed alpha
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There are 8 sheets in PDB entry 1ZVM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
172 173anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 126first strand
Strand 2
A
202 209parallel
Strand 3
A
235 243parallel
Strand 4
A
272 278parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 53first strand
Strand 2
B
172 173anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 126first strand
Strand 2
B
202 209parallel
Strand 3
B
235 243parallel
Strand 4
B
272 278parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 53first strand
Strand 2
C
172 173anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
123 126first strand
Strand 2
C
202 209parallel
Strand 3
C
235 243parallel
Strand 4
C
272 278parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
52 53first strand
Strand 2
D
172 173anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
123 126first strand
Strand 2
D
202 209parallel
Strand 3
D
235 243parallel
Strand 4
D
272 278parallel
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