Analysis of interatomic Contacts of Structural Units in PDB entry:
1ZVT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1ZVT entry

There are 2 chains in PDB entry 1ZVT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 497PRO 742
B
 SER 497PRO 742
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1ZVT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
556 560Right-handed 310
Helix 2
2
A
571 573Right-handed 310
Helix 3
3
A
609 612Right-handed 310
Helix 4
4
A
658 660Right-handed 310
Helix 5
5
A
675 681Right-handed alpha
Helix 6
6
A
710 716Right-handed alpha
Helix 7
7
B
519 523Right-handed 310
Helix 8
8
B
556 560Right-handed 310
Helix 9
9
B
571 573Right-handed 310
Helix 10
10
B
609 612Right-handed 310
Helix 11
11
B
658 660Right-handed 310
Helix 12
12
B
675 681Right-handed alpha
Helix 13
13
B
710 716Right-handed alpha
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There are 9 sheets in PDB entry 1ZVT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 538first strand
Strand 2
A
499 505anti-parallel
Strand 3
A
509 514anti-parallel
Strand 4
A
568 569anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
582 586first strand
Strand 2
A
543 547anti-parallel
Strand 3
A
551 555anti-parallel
Strand 4
A
619 620anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
634 635first strand
Strand 2
A
593 597anti-parallel
Strand 3
A
602 607anti-parallel
Strand 4
A
669 670anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
686 692first strand
Strand 2
A
642 647anti-parallel
Strand 3
A
651 656anti-parallel
Strand 4
A
726 727anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
705 709first strand
Strand 2
A
697 702anti-parallel
Strand 3
A
736 740anti-parallel
Strand 4
B
736 741parallel
Strand 5
B
697 702anti-parallel
Strand 6
B
705 709anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
531 538first strand
Strand 2
B
499 505anti-parallel
Strand 3
B
509 514anti-parallel
Strand 4
B
568 569anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
582 586first strand
Strand 2
B
543 547anti-parallel
Strand 3
B
551 555anti-parallel
Strand 4
B
619 620anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
634 635first strand
Strand 2
B
593 597anti-parallel
Strand 3
B
602 607anti-parallel
Strand 4
B
669 670anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
686 692first strand
Strand 2
B
642 647anti-parallel
Strand 3
B
651 656anti-parallel
Strand 4
B
726 727anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il