Analysis of interatomic Contacts of Structural Units in PDB entry:
1ZVV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1ZVV entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 12 chains in PDB entry 1ZVV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
O
 C 700 G 715
T
 C 700 G 715
R
 C 700 G 715
A
 MET 1LYS 332
W
 MET 1LYS 45
W
 ILE 47GLU 84
B
 MET 1LYS 332
P
 MET 1LYS 45
P
 ILE 47GLU 84
G
 MET 1LYS 332
J
 MET 1LYS 45
J
 ILE 47GLU 84
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 1ZVV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 12Right-handed alpha
Helix 2
2
A
15 25Right-handed alpha
Helix 3
3
A
30 45Right-handed alpha
Helix 4
4
A
49 58Right-handed alpha
Helix 5
5
A
72 89Right-handed alpha
Helix 6
6
A
101 115Right-handed alpha
Helix 7
7
A
128 136Right-handed alpha
Helix 8
8
A
160 175Right-handed alpha
Helix 9
9
A
189 194Right-handed alpha
Helix 10
10
A
195 207Right-handed alpha
Helix 11
11
A
222 235Right-handed alpha
Helix 12
12
A
247 261Right-handed alpha
Helix 13
13
A
293 310Right-handed alpha
Helix 14
14
W
15 27Right-handed alpha
Helix 15
15
W
46 54Right-handed alpha
Helix 16
16
W
69 82Right-handed alpha
Helix 17
17
B
4 13Right-handed alpha
Helix 18
18
B
15 24Right-handed alpha
Helix 19
19
B
30 45Right-handed alpha
Helix 20
20
B
49 58Right-handed alpha
Helix 21
21
B
72 89Right-handed alpha
Helix 22
22
B
101 115Right-handed alpha
Helix 23
23
B
128 138Right-handed alpha
Helix 24
24
B
160 174Right-handed alpha
Helix 25
25
B
189 195Right-handed alpha
Helix 26
26
B
195 207Right-handed alpha
Helix 27
27
B
222 234Right-handed alpha
Helix 28
28
B
247 260Right-handed alpha
Helix 29
29
B
293 310Right-handed alpha
Helix 30
30
P
15 27Right-handed alpha
Helix 31
31
P
46 54Right-handed alpha
Helix 32
32
P
69 82Right-handed alpha
Helix 33
33
G
4 12Right-handed alpha
Helix 34
34
G
15 20Right-handed alpha
Helix 35
35
G
30 42Right-handed alpha
Helix 36
36
G
49 58Right-handed alpha
Helix 37
37
G
72 89Right-handed alpha
Helix 38
38
G
103 115Right-handed alpha
Helix 39
39
G
128 137Right-handed alpha
Helix 40
40
G
160 174Right-handed alpha
Helix 41
41
G
195 207Right-handed alpha
Helix 42
42
G
222 235Right-handed alpha
Helix 43
43
G
248 261Right-handed alpha
Helix 44
44
G
277 281Right-handed 310
Helix 45
45
G
293 310Right-handed alpha
Helix 46
46
J
15 27Right-handed alpha
Helix 47
47
J
46 54Right-handed alpha
Helix 48
48
J
69 82Right-handed alpha
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There are 10 sheets in PDB entry 1ZVV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 97first strand
Strand 2
A
62 67parallel
Strand 3
A
119 122parallel
Strand 4
A
142 145parallel
Strand 5
A
156 157parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 183first strand
Strand 2
A
242 245parallel
Strand 3
A
270 275parallel
Strand 4
A
288 291parallel
Strand 5
A
325 326anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
W
2 6first strand
Strand 2
W
61 66anti-parallel
Strand 3
W
32 37anti-parallel
Strand 4
W
40 43anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
62 66parallel
Strand 3
B
119 122parallel
Strand 4
B
142 145parallel
Strand 5
B
156 158parallel
Strand 6
B
318 320parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 218first strand
Strand 2
B
180 184parallel
Strand 3
B
242 245parallel
Strand 4
B
270 273parallel
Strand 5
B
288 291parallel
Strand 6
B
324 326anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
4 6first strand
Strand 2
P
61 66anti-parallel
Strand 3
P
32 37anti-parallel
Strand 4
P
40 43anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
92 97first strand
Strand 2
G
62 67parallel
Strand 3
G
119 122parallel
Strand 4
G
142 145parallel
Strand 5
G
156 157parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
216 217first strand
Strand 2
G
180 183parallel
Strand 3
G
242 245parallel
Strand 4
G
270 275parallel
Strand 5
G
288 291parallel
Strand 6
G
324 326anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
5 6first strand
Strand 2
J
61 62anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
41 43first strand
Strand 2
J
32 36anti-parallel
Strand 3
J
65 66anti-parallel
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