Analysis of interatomic Contacts of Structural Units in PDB entry:
21VT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 21VT entry

There are 2 chains in PDB entry 21VT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 317ALA 624
B
 ASP 317GLN 622
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 21VT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
332 334Right-handed 310
Helix 2
AA2
A
336 344Right-handed alpha
Helix 3
AA3
A
344 353Right-handed alpha
Helix 4
AA4
A
356 366Right-handed alpha
Helix 5
AA5
A
367 369Right-handed 310
Helix 6
AA6
A
371 373Right-handed 310
Helix 7
AA7
A
424 428Right-handed 310
Helix 8
AA8
A
429 449Right-handed alpha
Helix 9
AA9
A
465 475Right-handed alpha
Helix 10
AB1
A
498 503Right-handed alpha
Helix 11
AB2
A
504 511Right-handed 310
Helix 12
AB3
A
519 533Right-handed alpha
Helix 13
AB4
A
551 558Right-handed alpha
Helix 14
AB5
A
561 578Right-handed alpha
Helix 15
AB6
A
603 609Right-handed 310
Helix 16
AB7
A
611 618Right-handed alpha
Helix 17
AB8
B
332 334Right-handed 310
Helix 18
AB9
B
336 344Right-handed alpha
Helix 19
AC1
B
344 352Right-handed alpha
Helix 20
AC2
B
356 367Right-handed alpha
Helix 21
AC3
B
424 428Right-handed 310
Helix 22
AC4
B
429 449Right-handed alpha
Helix 23
AC5
B
465 475Right-handed alpha
Helix 24
AC6
B
498 503Right-handed alpha
Helix 25
AC7
B
504 511Right-handed 310
Helix 26
AC8
B
519 533Right-handed alpha
Helix 27
AC9
B
551 557Right-handed alpha
Helix 28
AD1
B
561 578Right-handed alpha
Helix 29
AD2
B
603 609Right-handed 310
Helix 30
AD3
B
611 618Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 21VT. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 330first strand
Strand 2
A
487 493parallel
Strand 3
A
452 460anti-parallel
Strand 4
A
415 422parallel
Strand 5
A
538 545parallel
Strand 6
A
581 587parallel
Strand 7
A
598 601parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
327 330first strand
Strand 2
B
487 493parallel
Strand 3
B
452 460anti-parallel
Strand 4
B
415 422parallel
Strand 5
B
538 545parallel
Strand 6
B
581 587parallel
Strand 7
B
598 601parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il