Analysis of interatomic Contacts of Structural Units in PDB entry:
22AV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 22AV entry

There are 2 chains in PDB entry 22AV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 36LEU 704
B
 G 1 C 77
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 22AV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 55Right-handed alpha
Helix 2
AA2
A
62 71Right-handed alpha
Helix 3
AA3
A
86 97Right-handed alpha
Helix 4
AA4
A
97 104Right-handed alpha
Helix 5
AA5
A
121 124Right-handed 310
Helix 6
AA6
A
132 138Right-handed alpha
Helix 7
AA7
A
142 156Right-handed alpha
Helix 8
AA8
A
162 165Right-handed 310
Helix 9
AA9
A
166 173Right-handed alpha
Helix 10
AB1
A
188 199Right-handed alpha
Helix 11
AB2
A
217 230Right-handed alpha
Helix 12
AB3
A
242 246Right-handed 310
Helix 13
AB4
A
273 277Right-handed 310
Helix 14
AB5
A
282 287Right-handed alpha
Helix 15
AB6
A
289 309Right-handed alpha
Helix 16
AB7
A
324 340Right-handed alpha
Helix 17
AB8
A
381 385Right-handed 310
Helix 18
AB9
A
389 393Right-handed 310
Helix 19
AC1
A
397 404Right-handed alpha
Helix 20
AC2
A
405 409Right-handed 310
Helix 21
AC3
A
413 418Right-handed alpha
Helix 22
AC4
A
529 538Right-handed alpha
Helix 23
AC5
A
544 546Right-handed 310
Helix 24
AC6
A
564 574Right-handed alpha
Helix 25
AC7
A
605 609Right-handed 310
Helix 26
AC8
A
623 632Right-handed alpha
Helix 27
AC9
A
637 641Right-handed 310
Helix 28
AD1
A
642 652Right-handed alpha
Helix 29
AD2
A
691 702Right-handed alpha
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There are 8 sheets in PDB entry 22AV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
126 128anti-parallel
Strand 3
A
77 80anti-parallel
Strand 4
A
158 161anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 182first strand
Strand 2
A
211 213parallel
Strand 3
A
236 239parallel
Strand 4
A
580 583anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 253first strand
Strand 2
A
256 259anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 268first strand
Strand 2
A
310 320parallel
Strand 3
A
423 428anti-parallel
Strand 4
A
344 345anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 367first strand
Strand 2
A
373 374anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 522first strand
Strand 2
A
548 550anti-parallel
Strand 3
A
559 562anti-parallel
Strand 4
A
585 589anti-parallel
Strand 5
A
602 603anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
619 622first strand
Strand 2
A
658 661parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
655 656first strand
Strand 2
A
680 681anti-parallel
Strand 3
A
686 687anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il