Analysis of interatomic Contacts of Structural Units in PDB entry:
22JZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 22JZ entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 7 chains in PDB entry 22JZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 41	CYS 891
A	ALA 894	ALA 894
A	LEU 898	ALA 899
B	HIS 41	PRO 852
C	THR 6	VAL 365
D	SER 1	ILE 107
E	VAL 5	ALA 124

There are 49 helices in PDB entry 22JZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	75	92	Right-handed alpha
Helix 2	AA2	A	111	120	Right-handed alpha
Helix 3	AA3	A	123	127	Right-handed 310
Helix 4	AA4	A	158	173	Right-handed alpha
Helix 5	AA5	A	183	188	Right-handed 310
Helix 6	AA6	A	201	216	Right-handed alpha
Helix 7	AA7	A	228	246	Right-handed alpha
Helix 8	AA8	A	264	276	Right-handed alpha
Helix 9	AA9	A	288	303	Right-handed alpha
Helix 10	AB1	A	343	352	Right-handed alpha
Helix 11	AB2	A	363	373	Right-handed alpha
Helix 12	AB3	A	407	429	Right-handed alpha
Helix 13	AB4	A	437	443	Right-handed alpha
Helix 14	AB5	A	445	453	Right-handed alpha
Helix 15	AB6	A	506	509	Right-handed 310
Helix 16	AB7	A	588	615	Right-handed alpha
Helix 17	AB8	A	618	624	Right-handed alpha
Helix 18	AB9	A	625	647	Right-handed alpha
Helix 19	AC1	A	651	665	Right-handed alpha
Helix 20	AC2	A	665	688	Right-handed alpha
Helix 21	AC3	A	698	723	Right-handed alpha
Helix 22	AC4	A	752	777	Right-handed alpha
Helix 23	AC5	A	787	811	Right-handed alpha
Helix 24	AC6	A	814	851	Right-handed alpha
Helix 25	AC7	B	75	92	Right-handed alpha
Helix 26	AC8	B	111	128	Right-handed alpha
Helix 27	AC9	B	158	171	Right-handed alpha
Helix 28	AD1	B	183	188	Right-handed 310
Helix 29	AD2	B	201	217	Right-handed alpha
Helix 30	AD3	B	230	246	Right-handed alpha
Helix 31	AD4	B	265	275	Right-handed alpha
Helix 32	AD5	B	288	303	Right-handed alpha
Helix 33	AD6	B	313	317	Right-handed 310
Helix 34	AD7	B	343	353	Right-handed alpha
Helix 35	AD8	B	363	373	Right-handed alpha
Helix 36	AD9	B	407	430	Right-handed alpha
Helix 37	AE1	B	437	443	Right-handed alpha
Helix 38	AE2	B	445	453	Right-handed alpha
Helix 39	AE3	B	484	488	Right-handed 310
Helix 40	AE4	B	591	615	Right-handed alpha
Helix 41	AE5	B	618	624	Right-handed alpha
Helix 42	AE6	B	625	647	Right-handed alpha
Helix 43	AE7	B	651	690	Right-handed alpha
Helix 44	AE8	B	698	724	Right-handed alpha
Helix 45	AE9	B	752	777	Right-handed alpha
Helix 46	AF1	B	786	809	Right-handed alpha
Helix 47	AF2	B	814	819	Right-handed 310
Helix 48	AF3	B	820	851	Right-handed alpha
Helix 49	AF4	C	98	109	Right-handed alpha

There are 26 sheets in PDB entry 22JZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	106	first strand
Strand 2	A	49	54	parallel
Strand 3	A	150	155	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	178	first strand
Strand 2	A	195	197	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	221	first strand
Strand 2	A	249	250	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	284	first strand
Strand 2	A	309	311	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	338	first strand
Strand 2	A	477	480	anti-parallel
Strand 3	A	494	497	anti-parallel
Strand 4	A	503	504	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	457	458	first strand
Strand 2	A	464	465	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	553	555	first strand
Strand 2	A	559	561	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	870	872	first strand
Strand 2	C	73	75	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	894	897	first strand
Strand 2	C	7	11	anti-parallel
Strand 3	C	19	22	anti-parallel
Strand 4	C	37	42	anti-parallel
Strand 5	C	113	117	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	104	first strand
Strand 2	B	49	54	parallel
Strand 3	B	150	155	parallel
Strand 4	B	176	178	parallel
Strand 5	B	196	197	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	59	first strand
Strand 2	B	69	70	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	256	first strand
Strand 2	B	220	226	parallel
Strand 3	B	282	285	parallel
Strand 4	B	309	311	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	338	first strand
Strand 2	B	477	481	anti-parallel
Strand 3	B	493	497	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	534	535	first strand
Strand 2	B	544	545	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	554	555	first strand
Strand 2	B	559	560	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	568	569	first strand
Strand 2	B	576	577	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	28	first strand
Strand 2	C	165	171	parallel
Strand 3	C	144	149	anti-parallel
Strand 4	C	54	61	anti-parallel
Strand 5	C	77	85	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	129	first strand
Strand 2	C	288	290	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	185	first strand
Strand 2	C	198	202	anti-parallel
Strand 3	C	215	222	anti-parallel
Strand 4	C	266	273	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	209	first strand
Strand 2	C	346	352	parallel
Strand 3	C	317	329	anti-parallel
Strand 4	C	228	241	anti-parallel
Strand 5	C	247	258	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	13	first strand
Strand 2	D	105	106	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	24	first strand
Strand 2	D	71	76	anti-parallel
Strand 3	D	63	68	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	55	first strand
Strand 2	D	46	50	anti-parallel
Strand 3	D	34	39	anti-parallel
Strand 4	D	86	91	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	10	first strand
Strand 2	E	21	28	anti-parallel
Strand 3	E	81	86	anti-parallel
Strand 4	E	72	76	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	36	first strand
Strand 2	E	102	103	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	62	63	first strand
Strand 2	E	48	53	anti-parallel
Strand 3	E	39	42	anti-parallel
Strand 4	E	96	99	anti-parallel
Strand 5	E	117	118	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 22JZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
22JZ