Analysis of interatomic Contacts of Structural Units in PDB entry:
22TY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 22TY entry

There are 2 chains in PDB entry 22TY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 200ALA 474
B
 ASP 200ALA 474
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 22TY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
200 212Right-handed alpha
Helix 2
AA2
A
229 240Right-handed alpha
Helix 3
AA3
A
241 245Right-handed 310
Helix 4
AA4
A
272 283Right-handed alpha
Helix 5
AA5
A
285 297Right-handed alpha
Helix 6
AA6
A
318 332Right-handed alpha
Helix 7
AA7
A
334 337Right-handed 310
Helix 8
AA8
A
338 351Right-handed alpha
Helix 9
AA9
A
363 378Right-handed alpha
Helix 10
AB1
A
381 398Right-handed alpha
Helix 11
AB2
A
405 420Right-handed alpha
Helix 12
AB3
A
423 433Right-handed alpha
Helix 13
AB4
A
458 473Right-handed alpha
Helix 14
AB5
B
201 212Right-handed alpha
Helix 15
AB6
B
228 240Right-handed alpha
Helix 16
AB7
B
241 245Right-handed 310
Helix 17
AB8
B
272 282Right-handed alpha
Helix 18
AB9
B
285 297Right-handed alpha
Helix 19
AC1
B
318 332Right-handed alpha
Helix 20
AC2
B
334 337Right-handed 310
Helix 21
AC3
B
338 351Right-handed alpha
Helix 22
AC4
B
363 378Right-handed alpha
Helix 23
AC5
B
381 398Right-handed alpha
Helix 24
AC6
B
405 420Right-handed alpha
Helix 25
AC7
B
423 433Right-handed alpha
Helix 26
AC8
B
458 474Right-handed alpha
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There are 4 sheets in PDB entry 22TY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 226first strand
Strand 2
A
218 220anti-parallel
Strand 3
A
453 457anti-parallel
Strand 4
A
446 448anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 271first strand
Strand 2
A
309 310anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 226first strand
Strand 2
B
218 220anti-parallel
Strand 3
B
453 457anti-parallel
Strand 4
B
446 448anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 271first strand
Strand 2
B
309 310anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il