Analysis of interatomic Contacts of Structural Units in PDB entry:
22VI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 22VI entry

There are 2 chains in PDB entry 22VI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLU 561
B	MET 1	GLU 561

There are 24 helices in PDB entry 22VI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	8	Right-handed 310
Helix 2	AA2	A	12	18	Right-handed alpha
Helix 3	AA3	A	46	50	Right-handed 310
Helix 4	AA4	A	103	107	Right-handed 310
Helix 5	AA5	A	108	113	Right-handed 310
Helix 6	AA6	A	151	155	Right-handed 310
Helix 7	AA7	A	208	212	Right-handed 310
Helix 8	AA8	A	216	220	Right-handed 310
Helix 9	AA9	A	371	374	Right-handed 310
Helix 10	AB1	A	425	429	Right-handed 310
Helix 11	AB2	A	532	536	Right-handed 310
Helix 12	AB3	A	537	542	Right-handed alpha
Helix 13	AB4	B	4	8	Right-handed 310
Helix 14	AB5	B	12	18	Right-handed alpha
Helix 15	AB6	B	46	50	Right-handed 310
Helix 16	AB7	B	103	107	Right-handed 310
Helix 17	AB8	B	108	113	Right-handed 310
Helix 18	AB9	B	151	155	Right-handed 310
Helix 19	AC1	B	208	212	Right-handed 310
Helix 20	AC2	B	216	220	Right-handed 310
Helix 21	AC3	B	371	374	Right-handed 310
Helix 22	AC4	B	425	429	Right-handed 310
Helix 23	AC5	B	532	536	Right-handed 310
Helix 24	AC6	B	537	542	Right-handed alpha

There are 20 sheets in PDB entry 22VI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	37	first strand
Strand 2	A	472	475	parallel
Strand 3	A	479	482	anti-parallel
Strand 4	A	488	493	anti-parallel
Strand 5	A	499	504	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	57	first strand
Strand 2	A	553	558	anti-parallel
Strand 3	A	521	528	anti-parallel
Strand 4	A	514	518	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	70	first strand
Strand 2	A	73	78	anti-parallel
Strand 3	A	82	87	anti-parallel
Strand 4	A	93	98	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	120	first strand
Strand 2	A	123	127	anti-parallel
Strand 3	A	132	137	anti-parallel
Strand 4	A	143	148	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	165	first strand
Strand 2	A	168	171	anti-parallel
Strand 3	A	183	188	anti-parallel
Strand 4	A	194	199	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	232	first strand
Strand 2	A	237	241	anti-parallel
Strand 3	A	265	269	anti-parallel
Strand 4	A	276	281	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	303	first strand
Strand 2	A	321	328	anti-parallel
Strand 3	A	336	340	anti-parallel
Strand 4	A	346	350	anti-parallel
Strand 5	A	312	315	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	361	first strand
Strand 2	A	367	369	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	384	first strand
Strand 2	A	414	419	anti-parallel
Strand 3	A	432	437	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	400	first strand
Strand 2	A	405	411	anti-parallel
Strand 3	A	446	452	anti-parallel
Strand 4	A	458	464	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	37	first strand
Strand 2	B	472	475	parallel
Strand 3	B	479	482	anti-parallel
Strand 4	B	488	493	anti-parallel
Strand 5	B	499	504	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	57	first strand
Strand 2	B	553	558	anti-parallel
Strand 3	B	521	528	anti-parallel
Strand 4	B	514	518	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	70	first strand
Strand 2	B	73	78	anti-parallel
Strand 3	B	82	87	anti-parallel
Strand 4	B	93	98	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	120	first strand
Strand 2	B	123	127	anti-parallel
Strand 3	B	132	137	anti-parallel
Strand 4	B	143	148	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	165	first strand
Strand 2	B	168	171	anti-parallel
Strand 3	B	183	188	anti-parallel
Strand 4	B	194	199	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	232	first strand
Strand 2	B	237	241	anti-parallel
Strand 3	B	265	269	anti-parallel
Strand 4	B	276	281	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	303	first strand
Strand 2	B	321	328	anti-parallel
Strand 3	B	336	340	anti-parallel
Strand 4	B	346	350	anti-parallel
Strand 5	B	312	315	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	361	first strand
Strand 2	B	367	369	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	382	384	first strand
Strand 2	B	414	419	anti-parallel
Strand 3	B	432	437	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	400	first strand
Strand 2	B	405	411	anti-parallel
Strand 3	B	446	452	anti-parallel
Strand 4	B	458	464	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 22VI

Analysis of interatomic Contacts of Structural Units in PDB entry:
22VI