Analysis of interatomic Contacts of Structural Units in PDB entry:
23JW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 23JW entry

There are 4 chains in PDB entry 23JW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 4	LYS 569
C	ARG 8	LYS 569
B	ARG 8	LYS 569
D	ARG 8	THR 568

There are130 helices in PDB entry 23JW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	20	Right-handed alpha
Helix 2	AA2	A	26	30	Right-handed 310
Helix 3	AA3	A	31	38	Right-handed alpha
Helix 4	AA4	A	50	64	Right-handed alpha
Helix 5	AA5	A	67	80	Right-handed alpha
Helix 6	AA6	A	82	92	Right-handed alpha
Helix 7	AA7	A	93	102	Right-handed alpha
Helix 8	AA8	A	104	112	Right-handed alpha
Helix 9	AA9	A	112	117	Right-handed alpha
Helix 10	AB1	A	128	130	Right-handed 310
Helix 11	AB2	A	132	138	Right-handed alpha
Helix 12	AB3	A	162	166	Right-handed 310
Helix 13	AB4	A	167	182	Right-handed alpha
Helix 14	AB5	A	184	186	Right-handed 310
Helix 15	AB6	A	199	204	Right-handed alpha
Helix 16	AB7	A	217	237	Right-handed alpha
Helix 17	AB8	A	248	260	Right-handed alpha
Helix 18	AB9	A	268	289	Right-handed alpha
Helix 19	AC1	A	291	295	Right-handed 310
Helix 20	AC2	A	303	320	Right-handed alpha
Helix 21	AC3	A	323	328	Right-handed alpha
Helix 22	AC4	A	350	354	Right-handed 310
Helix 23	AC5	A	363	372	Right-handed alpha
Helix 24	AC6	A	387	398	Right-handed alpha
Helix 25	AC7	A	409	413	Right-handed 310
Helix 26	AC8	A	416	424	Right-handed alpha
Helix 27	AC9	A	453	456	Right-handed 310
Helix 28	AD1	A	457	469	Right-handed alpha
Helix 29	AD2	A	474	488	Right-handed alpha
Helix 30	AD3	A	490	496	Right-handed alpha
Helix 31	AD4	A	502	504	Right-handed 310
Helix 32	AD5	A	505	524	Right-handed alpha
Helix 33	AD6	A	535	543	Right-handed alpha
Helix 34	AD7	A	560	565	Right-handed alpha
Helix 35	AD8	C	15	20	Right-handed alpha
Helix 36	AD9	C	26	30	Right-handed 310
Helix 37	AE1	C	31	38	Right-handed alpha
Helix 38	AE2	C	50	65	Right-handed alpha
Helix 39	AE3	C	67	80	Right-handed alpha
Helix 40	AE4	C	82	93	Right-handed alpha
Helix 41	AE5	C	93	102	Right-handed alpha
Helix 42	AE6	C	104	117	Right-handed alpha
Helix 43	AE7	C	128	130	Right-handed 310
Helix 44	AE8	C	132	138	Right-handed alpha
Helix 45	AE9	C	162	166	Right-handed 310
Helix 46	AF1	C	167	182	Right-handed alpha
Helix 47	AF2	C	184	186	Right-handed 310
Helix 48	AF3	C	199	205	Right-handed alpha
Helix 49	AF4	C	218	237	Right-handed alpha
Helix 50	AF5	C	248	260	Right-handed alpha
Helix 51	AF6	C	268	285	Right-handed alpha
Helix 52	AF7	C	291	295	Right-handed 310
Helix 53	AF8	C	303	321	Right-handed alpha
Helix 54	AF9	C	323	329	Right-handed alpha
Helix 55	AG1	C	351	355	Right-handed 310
Helix 56	AG2	C	364	372	Right-handed alpha
Helix 57	AG3	C	387	398	Right-handed alpha
Helix 58	AG4	C	409	413	Right-handed 310
Helix 59	AG5	C	417	422	Right-handed alpha
Helix 60	AG6	C	453	456	Right-handed 310
Helix 61	AG7	C	457	469	Right-handed alpha
Helix 62	AG8	C	474	487	Right-handed alpha
Helix 63	AG9	C	490	495	Right-handed alpha
Helix 64	AH1	C	502	504	Right-handed 310
Helix 65	AH2	C	505	524	Right-handed alpha
Helix 66	AH3	C	535	543	Right-handed alpha
Helix 67	AH4	C	560	565	Right-handed alpha
Helix 68	AH5	B	15	21	Right-handed 310
Helix 69	AH6	B	26	30	Right-handed 310
Helix 70	AH7	B	31	38	Right-handed alpha
Helix 71	AH8	B	50	65	Right-handed alpha
Helix 72	AH9	B	67	80	Right-handed alpha
Helix 73	AI1	B	82	93	Right-handed alpha
Helix 74	AI2	B	93	102	Right-handed alpha
Helix 75	AI3	B	104	112	Right-handed alpha
Helix 76	AI4	B	112	117	Right-handed alpha
Helix 77	AI5	B	128	130	Right-handed 310
Helix 78	AI6	B	132	138	Right-handed alpha
Helix 79	AI7	B	162	166	Right-handed 310
Helix 80	AI8	B	167	182	Right-handed alpha
Helix 81	AI9	B	184	186	Right-handed 310
Helix 82	AJ1	B	199	205	Right-handed alpha
Helix 83	AJ2	B	217	237	Right-handed alpha
Helix 84	AJ3	B	248	260	Right-handed alpha
Helix 85	AJ4	B	268	289	Right-handed alpha
Helix 86	AJ5	B	303	321	Right-handed alpha
Helix 87	AJ6	B	323	328	Right-handed alpha
Helix 88	AJ7	B	348	353	Right-handed alpha
Helix 89	AJ8	B	363	372	Right-handed alpha
Helix 90	AJ9	B	387	398	Right-handed alpha
Helix 91	AK1	B	409	413	Right-handed 310
Helix 92	AK2	B	416	424	Right-handed alpha
Helix 93	AK3	B	453	456	Right-handed 310
Helix 94	AK4	B	457	469	Right-handed alpha
Helix 95	AK5	B	474	488	Right-handed alpha
Helix 96	AK6	B	490	496	Right-handed alpha
Helix 97	AK7	B	502	504	Right-handed 310
Helix 98	AK8	B	505	524	Right-handed alpha
Helix 99	AK9	B	535	543	Right-handed alpha
Helix 100	AL1	B	560	565	Right-handed alpha
Helix 101	AL2	D	15	21	Right-handed 310
Helix 102	AL3	D	26	30	Right-handed 310
Helix 103	AL4	D	31	38	Right-handed alpha
Helix 104	AL5	D	50	64	Right-handed alpha
Helix 105	AL6	D	67	80	Right-handed alpha
Helix 106	AL7	D	82	93	Right-handed alpha
Helix 107	AL8	D	93	102	Right-handed alpha
Helix 108	AL9	D	104	117	Right-handed alpha
Helix 109	AM1	D	128	130	Right-handed 310
Helix 110	AM2	D	132	138	Right-handed alpha
Helix 111	AM3	D	162	166	Right-handed 310
Helix 112	AM4	D	167	180	Right-handed alpha
Helix 113	AM5	D	184	186	Right-handed 310
Helix 114	AM6	D	199	205	Right-handed alpha
Helix 115	AM7	D	218	237	Right-handed alpha
Helix 116	AM8	D	248	260	Right-handed alpha
Helix 117	AM9	D	270	289	Right-handed alpha
Helix 118	AN1	D	303	321	Right-handed alpha
Helix 119	AN2	D	323	329	Right-handed alpha
Helix 120	AN3	D	363	371	Right-handed alpha
Helix 121	AN4	D	387	398	Right-handed alpha
Helix 122	AN5	D	409	413	Right-handed 310
Helix 123	AN6	D	416	424	Right-handed alpha
Helix 124	AN7	D	453	456	Right-handed 310
Helix 125	AN8	D	457	469	Right-handed alpha
Helix 126	AN9	D	474	488	Right-handed alpha
Helix 127	AO1	D	490	497	Right-handed alpha
Helix 128	AO2	D	502	504	Right-handed 310
Helix 129	AO3	D	505	524	Right-handed alpha
Helix 130	AO4	D	535	542	Right-handed alpha

There are 13 sheets in PDB entry 23JW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	126	first strand
Strand 2	A	188	194	parallel
Strand 3	A	147	151	parallel
Strand 4	A	241	244	parallel
Strand 5	A	265	267	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	339	first strand
Strand 2	A	331	335	anti-parallel
Strand 3	A	297	300	parallel
Strand 4	A	375	378	parallel
Strand 5	A	402	405	parallel
Strand 6	A	429	432	parallel
Strand 7	A	450	451	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	439	440	first strand
Strand 2	A	446	447	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	126	first strand
Strand 2	C	188	194	parallel
Strand 3	C	147	151	parallel
Strand 4	C	241	244	parallel
Strand 5	C	265	267	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	339	first strand
Strand 2	C	331	335	anti-parallel
Strand 3	C	297	300	parallel
Strand 4	C	375	378	parallel
Strand 5	C	402	405	parallel
Strand 6	C	429	432	parallel
Strand 7	C	450	451	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	439	440	first strand
Strand 2	C	446	447	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	566	567	first strand
Strand 2	D	48	49	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	126	first strand
Strand 2	B	188	194	parallel
Strand 3	B	147	151	parallel
Strand 4	B	241	244	parallel
Strand 5	B	265	267	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	339	first strand
Strand 2	B	331	335	anti-parallel
Strand 3	B	297	300	parallel
Strand 4	B	375	378	parallel
Strand 5	B	402	405	parallel
Strand 6	B	429	432	parallel
Strand 7	B	450	451	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	439	440	first strand
Strand 2	B	446	447	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	126	first strand
Strand 2	D	188	194	parallel
Strand 3	D	147	151	parallel
Strand 4	D	241	244	parallel
Strand 5	D	265	267	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	331	334	first strand
Strand 2	D	297	300	parallel
Strand 3	D	375	378	parallel
Strand 4	D	402	405	parallel
Strand 5	D	429	432	parallel
Strand 6	D	450	451	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	439	441	first strand
Strand 2	D	445	447	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 23JW

Analysis of interatomic Contacts of Structural Units in PDB entry:
23JW