Analysis of interatomic Contacts of Structural Units in PDB entry:
23VJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 23VJ entry

There are 2 chains in PDB entry 23VJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 2PHE 482
B
 LEU 5PHE 482
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 23VJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 9Right-handed alpha
Helix 2
AA2
A
11 27Right-handed alpha
Helix 3
AA3
A
32 34Right-handed 310
Helix 4
AA4
A
35 40Right-handed alpha
Helix 5
AA5
A
42 56Right-handed alpha
Helix 6
AA6
A
80 88Right-handed alpha
Helix 7
AA7
A
91 103Right-handed alpha
Helix 8
AA8
A
108 116Right-handed alpha
Helix 9
AA9
A
118 134Right-handed alpha
Helix 10
AB1
A
135 137Right-handed 310
Helix 11
AB2
A
152 165Right-handed alpha
Helix 12
AB3
A
166 168Right-handed 310
Helix 13
AB4
A
176 193Right-handed alpha
Helix 14
AB5
A
201 218Right-handed alpha
Helix 15
AB6
A
231 247Right-handed alpha
Helix 16
AB7
A
253 267Right-handed alpha
Helix 17
AB8
A
275 285Right-handed alpha
Helix 18
AB9
A
286 305Right-handed alpha
Helix 19
AC1
A
306 312Right-handed 310
Helix 20
AC2
A
313 328Right-handed alpha
Helix 21
AC3
A
328 335Right-handed alpha
Helix 22
AC4
A
336 339Right-handed 310
Helix 23
AC5
A
347 352Right-handed alpha
Helix 24
AC6
A
354 368Right-handed alpha
Helix 25
AC7
A
373 390Right-handed alpha
Helix 26
AC8
A
405 421Right-handed alpha
Helix 27
AC9
A
430 437Right-handed alpha
Helix 28
AD1
A
466 476Right-handed alpha
Helix 29
AD2
A
477 481Right-handed 310
Helix 30
AD3
B
13 18Right-handed alpha
Helix 31
AD4
B
93 103Right-handed alpha
Helix 32
AD5
B
108 116Right-handed alpha
Helix 33
AD6
B
118 134Right-handed alpha
Helix 34
AD7
B
135 137Right-handed 310
Helix 35
AD8
B
152 165Right-handed alpha
Helix 36
AD9
B
166 168Right-handed 310
Helix 37
AE1
B
176 194Right-handed alpha
Helix 38
AE2
B
201 218Right-handed alpha
Helix 39
AE3
B
231 247Right-handed alpha
Helix 40
AE4
B
253 267Right-handed alpha
Helix 41
AE5
B
275 304Right-handed alpha
Helix 42
AE6
B
306 312Right-handed 310
Helix 43
AE7
B
313 328Right-handed alpha
Helix 44
AE8
B
328 336Right-handed alpha
Helix 45
AE9
B
339 344Right-handed alpha
Helix 46
AF1
B
356 366Right-handed alpha
Helix 47
AF2
B
372 392Right-handed alpha
Helix 48
AF3
B
405 421Right-handed alpha
Helix 49
AF4
B
430 437Right-handed 310
Helix 50
AF5
B
466 477Right-handed alpha
Helix 51
AF6
B
477 482Right-handed alpha
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There are 5 sheets in PDB entry 23VJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 66first strand
Strand 2
A
69 74anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 107first strand
Strand 2
A
146 150anti-parallel
Strand 3
A
139 142anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
425 428first strand
Strand 2
A
397 401parallel
Strand 3
A
444 447parallel
Strand 4
A
458 460parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 107first strand
Strand 2
B
146 150anti-parallel
Strand 3
B
139 142anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
424 428first strand
Strand 2
B
396 401parallel
Strand 3
B
444 447parallel
Strand 4
B
458 460parallel
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