Analysis of interatomic Contacts of Structural Units in PDB entry:
24GD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 24GD entry

There are 2 chains in PDB entry 24GD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 45ALA 381
B
 GLN 45ALA 381
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 24GD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 57Right-handed alpha
Helix 2
AA2
A
70 74Right-handed 310
Helix 3
AA3
A
78 90Right-handed alpha
Helix 4
AA4
A
107 116Right-handed alpha
Helix 5
AA5
A
125 130Right-handed 310
Helix 6
AA6
A
133 141Right-handed 310
Helix 7
AA7
A
147 156Right-handed alpha
Helix 8
AA8
A
157 171Right-handed alpha
Helix 9
AA9
A
197 202Right-handed 310
Helix 10
AB1
A
211 221Right-handed alpha
Helix 11
AB2
A
229 231Right-handed 310
Helix 12
AB3
A
232 239Right-handed alpha
Helix 13
AB4
A
248 255Right-handed alpha
Helix 14
AB5
A
280 286Right-handed alpha
Helix 15
AB6
A
287 323Right-handed alpha
Helix 16
AB7
A
331 343Right-handed alpha
Helix 17
AB8
A
346 348Right-handed 310
Helix 18
AB9
A
349 358Right-handed alpha
Helix 19
AC1
A
359 371Right-handed alpha
Helix 20
AC2
B
46 57Right-handed alpha
Helix 21
AC3
B
70 74Right-handed 310
Helix 22
AC4
B
78 90Right-handed alpha
Helix 23
AC5
B
107 116Right-handed alpha
Helix 24
AC6
B
127 130Right-handed 310
Helix 25
AC7
B
133 141Right-handed 310
Helix 26
AC8
B
147 156Right-handed alpha
Helix 27
AC9
B
157 171Right-handed alpha
Helix 28
AD1
B
197 202Right-handed 310
Helix 29
AD2
B
211 221Right-handed alpha
Helix 30
AD3
B
229 231Right-handed 310
Helix 31
AD4
B
232 239Right-handed alpha
Helix 32
AD5
B
248 255Right-handed alpha
Helix 33
AD6
B
280 286Right-handed alpha
Helix 34
AD7
B
287 323Right-handed alpha
Helix 35
AD8
B
331 343Right-handed alpha
Helix 36
AD9
B
346 348Right-handed 310
Helix 37
AE1
B
349 358Right-handed alpha
Helix 38
AE2
B
359 371Right-handed alpha
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There are 6 sheets in PDB entry 24GD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 99first strand
Strand 2
A
59 64parallel
Strand 3
A
121 124parallel
Strand 4
A
274 279anti-parallel
Strand 5
A
173 179anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 245first strand
Strand 2
A
186 189anti-parallel
Strand 3
A
261 265anti-parallel
Strand 4
A
326 328parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 208first strand
Strand 2
A
224 227parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 99first strand
Strand 2
B
59 64parallel
Strand 3
B
121 125parallel
Strand 4
B
274 279anti-parallel
Strand 5
B
173 179anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 245first strand
Strand 2
B
186 189anti-parallel
Strand 3
B
261 265anti-parallel
Strand 4
B
326 328parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 208first strand
Strand 2
B
224 227parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il