Analysis of interatomic Contacts of Structural Units in PDB entry:
24JD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 24JD entry

There are 4 chains in PDB entry 24JD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 251
B	MET 1	GLY 251
C	MET 1	GLY 251
D	MET 1	GLY 251

There are 24 helices in PDB entry 24JD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	23	Right-handed alpha
Helix 2	AA2	A	55	57	Right-handed 310
Helix 3	AA3	A	72	81	Right-handed alpha
Helix 4	AA4	A	141	155	Right-handed alpha
Helix 5	AA5	A	203	210	Right-handed alpha
Helix 6	AA6	A	211	216	Right-handed 310
Helix 7	AA7	B	8	23	Right-handed alpha
Helix 8	AA8	B	55	57	Right-handed 310
Helix 9	AA9	B	72	81	Right-handed alpha
Helix 10	AB1	B	141	155	Right-handed alpha
Helix 11	AB2	B	203	210	Right-handed alpha
Helix 12	AB3	B	211	216	Right-handed 310
Helix 13	AB4	C	8	23	Right-handed alpha
Helix 14	AB5	C	55	57	Right-handed 310
Helix 15	AB6	C	72	81	Right-handed alpha
Helix 16	AB7	C	141	153	Right-handed alpha
Helix 17	AB8	C	203	210	Right-handed alpha
Helix 18	AB9	C	211	216	Right-handed 310
Helix 19	AC1	D	8	23	Right-handed alpha
Helix 20	AC2	D	55	57	Right-handed 310
Helix 21	AC3	D	72	81	Right-handed alpha
Helix 22	AC4	D	141	155	Right-handed alpha
Helix 23	AC5	D	203	210	Right-handed alpha
Helix 24	AC6	D	211	216	Right-handed 310

There are 8 sheets in PDB entry 24JD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	62	first strand
Strand 2	A	2	6	anti-parallel
Strand 3	A	86	93	anti-parallel
Strand 4	A	98	105	anti-parallel
Strand 5	A	111	121	anti-parallel
Strand 6	A	66	71	anti-parallel
Strand 7	A	25	30	anti-parallel
Strand 8	A	34	40	anti-parallel
Strand 9	A	46	53	anti-parallel
Strand 10	A	240	245	anti-parallel
Strand 11	A	229	234	anti-parallel
Strand 12	A	218	223	anti-parallel
Strand 13	A	135	140	anti-parallel
Strand 14	A	188	193	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	62	first strand
Strand 2	A	2	6	anti-parallel
Strand 3	A	86	93	anti-parallel
Strand 4	A	98	105	anti-parallel
Strand 5	A	111	121	anti-parallel
Strand 6	B	176	182	anti-parallel
Strand 7	B	166	173	anti-parallel
Strand 8	B	157	163	anti-parallel
Strand 9	B	197	202	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	202	first strand
Strand 2	A	157	163	anti-parallel
Strand 3	A	166	173	anti-parallel
Strand 4	A	176	182	anti-parallel
Strand 5	C	111	117	anti-parallel
Strand 6	C	98	105	anti-parallel
Strand 7	C	86	93	anti-parallel
Strand 8	C	2	6	anti-parallel
Strand 9	C	59	62	anti-parallel

Back to list of sheets
Back to top of page

There are 14 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	62	first strand
Strand 2	B	2	6	anti-parallel
Strand 3	B	86	93	anti-parallel
Strand 4	B	98	105	anti-parallel
Strand 5	B	111	121	anti-parallel
Strand 6	B	66	71	anti-parallel
Strand 7	B	25	30	anti-parallel
Strand 8	B	34	40	anti-parallel
Strand 9	B	46	53	anti-parallel
Strand 10	B	240	245	anti-parallel
Strand 11	B	229	234	anti-parallel
Strand 12	B	218	223	anti-parallel
Strand 13	B	135	140	anti-parallel
Strand 14	B	188	193	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	62	first strand
Strand 2	B	2	6	anti-parallel
Strand 3	B	86	93	anti-parallel
Strand 4	B	98	105	anti-parallel
Strand 5	B	111	121	anti-parallel
Strand 6	C	176	182	anti-parallel
Strand 7	C	166	173	anti-parallel
Strand 8	C	157	163	anti-parallel
Strand 9	C	197	202	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	121	first strand
Strand 2	C	66	71	anti-parallel
Strand 3	C	25	30	anti-parallel
Strand 4	C	34	40	anti-parallel
Strand 5	C	46	53	anti-parallel
Strand 6	C	240	245	anti-parallel
Strand 7	C	229	234	anti-parallel
Strand 8	C	218	223	anti-parallel
Strand 9	C	135	140	anti-parallel
Strand 10	C	188	193	anti-parallel

Back to list of sheets
Back to top of page

There are 14 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	62	first strand
Strand 2	D	2	6	anti-parallel
Strand 3	D	86	93	anti-parallel
Strand 4	D	98	105	anti-parallel
Strand 5	D	111	121	anti-parallel
Strand 6	D	66	71	anti-parallel
Strand 7	D	25	30	anti-parallel
Strand 8	D	34	40	anti-parallel
Strand 9	D	46	53	anti-parallel
Strand 10	D	240	245	anti-parallel
Strand 11	D	229	234	anti-parallel
Strand 12	D	218	223	anti-parallel
Strand 13	D	135	140	anti-parallel
Strand 14	D	190	193	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	182	first strand
Strand 2	D	166	173	anti-parallel
Strand 3	D	157	163	anti-parallel
Strand 4	D	197	202	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 24JD

Analysis of interatomic Contacts of Structural Units in PDB entry:
24JD