Analysis of interatomic Contacts of Structural Units in PDB entry:
24RR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 24RR entry

There are 2 chains in PDB entry 24RR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 61GLU 237
B
 ALA 59GLU 237
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 24RR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 73Right-handed alpha
Helix 2
AA2
A
95 102Right-handed alpha
Helix 3
AA3
A
110 113Right-handed 310
Helix 4
AA4
A
123 128Right-handed alpha
Helix 5
AA5
A
164 168Right-handed 310
Helix 6
AA6
B
60 76Right-handed alpha
Helix 7
AA7
B
97 102Right-handed alpha
Helix 8
AA8
B
110 113Right-handed 310
Helix 9
AA9
B
123 130Right-handed alpha
Helix 10
AB1
B
164 168Right-handed 310
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There are 2 sheets in PDB entry 24RR. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 109first strand
Strand 2
A
114 119anti-parallel
Strand 3
A
131 133parallel
Strand 4
A
146 153anti-parallel
Strand 5
A
208 215parallel
Strand 6
A
224 232anti-parallel
Strand 7
A
181 193anti-parallel
Strand 8
A
173 178anti-parallel
Strand 9
A
103 109anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 109first strand
Strand 2
B
114 119anti-parallel
Strand 3
B
131 133parallel
Strand 4
B
146 151anti-parallel
Strand 5
B
208 216parallel
Strand 6
B
223 232anti-parallel
Strand 7
B
181 193anti-parallel
Strand 8
B
173 178anti-parallel
Strand 9
B
103 109anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il