Analysis of interatomic Contacts of Structural Units in PDB entry:
24SV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 24SV entry

There are 4 chains in PDB entry 24SV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 422
B	MET 1	LEU 419
C	MET 1	VAL 422
D	MET 1	LEU 419

There are 70 helices in PDB entry 24SV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	29	Right-handed alpha
Helix 2	AA2	A	68	78	Right-handed alpha
Helix 3	AA3	A	83	85	Right-handed 310
Helix 4	AA4	A	97	103	Right-handed alpha
Helix 5	AA5	A	103	108	Right-handed alpha
Helix 6	AA6	A	110	123	Right-handed alpha
Helix 7	AA7	A	140	157	Right-handed alpha
Helix 8	AA8	A	178	194	Right-handed alpha
Helix 9	AA9	A	202	212	Right-handed alpha
Helix 10	AB1	A	219	240	Right-handed alpha
Helix 11	AB2	A	247	256	Right-handed alpha
Helix 12	AB3	A	282	291	Right-handed alpha
Helix 13	AB4	A	292	296	Right-handed 310
Helix 14	AB5	A	320	333	Right-handed alpha
Helix 15	AB6	A	370	386	Right-handed alpha
Helix 16	AB7	A	390	396	Right-handed alpha
Helix 17	AB8	A	400	421	Right-handed alpha
Helix 18	AB9	B	11	29	Right-handed alpha
Helix 19	AC1	B	45	48	Right-handed 310
Helix 20	AC2	B	68	75	Right-handed alpha
Helix 21	AC3	B	84	86	Right-handed 310
Helix 22	AC4	B	98	104	Right-handed alpha
Helix 23	AC5	B	106	123	Right-handed alpha
Helix 24	AC6	B	140	157	Right-handed alpha
Helix 25	AC7	B	178	194	Right-handed alpha
Helix 26	AC8	B	201	213	Right-handed alpha
Helix 27	AC9	B	218	234	Right-handed alpha
Helix 28	AD1	B	234	239	Right-handed alpha
Helix 29	AD2	B	246	255	Right-handed alpha
Helix 30	AD3	B	281	289	Right-handed alpha
Helix 31	AD4	B	290	294	Right-handed 310
Helix 32	AD5	B	317	330	Right-handed alpha
Helix 33	AD6	B	367	384	Right-handed alpha
Helix 34	AD7	B	388	393	Right-handed alpha
Helix 35	AD8	B	397	418	Right-handed alpha
Helix 36	AD9	C	11	29	Right-handed alpha
Helix 37	AE1	C	68	78	Right-handed alpha
Helix 38	AE2	C	83	85	Right-handed 310
Helix 39	AE3	C	97	103	Right-handed alpha
Helix 40	AE4	C	103	108	Right-handed alpha
Helix 41	AE5	C	110	123	Right-handed alpha
Helix 42	AE6	C	140	157	Right-handed alpha
Helix 43	AE7	C	178	194	Right-handed alpha
Helix 44	AE8	C	202	212	Right-handed alpha
Helix 45	AE9	C	219	240	Right-handed alpha
Helix 46	AF1	C	247	256	Right-handed alpha
Helix 47	AF2	C	282	291	Right-handed alpha
Helix 48	AF3	C	292	296	Right-handed 310
Helix 49	AF4	C	320	333	Right-handed alpha
Helix 50	AF5	C	370	386	Right-handed alpha
Helix 51	AF6	C	390	396	Right-handed alpha
Helix 52	AF7	C	400	421	Right-handed alpha
Helix 53	AF8	D	11	29	Right-handed alpha
Helix 54	AF9	D	45	48	Right-handed 310
Helix 55	AG1	D	68	75	Right-handed alpha
Helix 56	AG2	D	84	86	Right-handed 310
Helix 57	AG3	D	98	104	Right-handed alpha
Helix 58	AG4	D	106	123	Right-handed alpha
Helix 59	AG5	D	140	157	Right-handed alpha
Helix 60	AG6	D	178	194	Right-handed alpha
Helix 61	AG7	D	201	213	Right-handed alpha
Helix 62	AG8	D	218	234	Right-handed alpha
Helix 63	AG9	D	234	239	Right-handed alpha
Helix 64	AH1	D	246	255	Right-handed alpha
Helix 65	AH2	D	281	289	Right-handed alpha
Helix 66	AH3	D	290	294	Right-handed 310
Helix 67	AH4	D	317	330	Right-handed alpha
Helix 68	AH5	D	367	384	Right-handed alpha
Helix 69	AH6	D	388	393	Right-handed alpha
Helix 70	AH7	D	397	418	Right-handed alpha

There are 8 sheets in PDB entry 24SV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	61	65	parallel
Strand 3	A	5	10	parallel
Strand 4	A	130	136	parallel
Strand 5	A	162	168	parallel
Strand 6	A	196	201	parallel
Strand 7	A	263	269	parallel
Strand 8	A	359	367	anti-parallel
Strand 9	A	307	316	anti-parallel
Strand 10	A	345	350	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	53	first strand
Strand 2	A	56	59	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	89	first strand
Strand 2	B	61	64	parallel
Strand 3	B	4	10	parallel
Strand 4	B	128	136	parallel
Strand 5	B	162	167	parallel
Strand 6	B	196	200	parallel
Strand 7	B	262	268	parallel
Strand 8	B	356	364	anti-parallel
Strand 9	B	305	314	anti-parallel
Strand 10	B	342	347	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	53	first strand
Strand 2	B	56	59	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	89	first strand
Strand 2	C	61	65	parallel
Strand 3	C	5	10	parallel
Strand 4	C	130	136	parallel
Strand 5	C	162	168	parallel
Strand 6	C	196	201	parallel
Strand 7	C	263	269	parallel
Strand 8	C	359	367	anti-parallel
Strand 9	C	307	316	anti-parallel
Strand 10	C	345	350	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	53	first strand
Strand 2	C	56	59	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	89	first strand
Strand 2	D	61	64	parallel
Strand 3	D	4	10	parallel
Strand 4	D	128	136	parallel
Strand 5	D	162	167	parallel
Strand 6	D	196	200	parallel
Strand 7	D	262	268	parallel
Strand 8	D	356	364	anti-parallel
Strand 9	D	305	314	anti-parallel
Strand 10	D	342	347	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	53	first strand
Strand 2	D	56	59	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 24SV

Analysis of interatomic Contacts of Structural Units in PDB entry:
24SV