Analysis of interatomic Contacts of Structural Units in PDB entry:
24TD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 24TD entry

There is 1 chain in PDB entry 24TD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 27LYS 492
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 24TD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 57Right-handed alpha
Helix 2
AA2
A
59 68Right-handed alpha
Helix 3
AA3
A
111 115Right-handed 310
Helix 4
AA4
A
138 151Right-handed alpha
Helix 5
AA5
A
163 167Right-handed 310
Helix 6
AA6
A
175 179Right-handed 310
Helix 7
AA7
A
183 185Right-handed 310
Helix 8
AA8
A
186 204Right-handed alpha
Helix 9
AA9
A
235 253Right-handed alpha
Helix 10
AB1
A
267 278Right-handed alpha
Helix 11
AB2
A
279 284Right-handed alpha
Helix 12
AB3
A
300 309Right-handed alpha
Helix 13
AB4
A
328 342Right-handed alpha
Helix 14
AB5
A
356 360Right-handed 310
Helix 15
AB6
A
375 386Right-handed alpha
Helix 16
AB7
A
440 442Right-handed 310
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There are 6 sheets in PDB entry 24TD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
A
425 430parallel
Strand 3
A
471 476anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 41first strand
Strand 2
A
393 396anti-parallel
Strand 3
A
402 407anti-parallel
Strand 4
A
412 418anti-parallel
Strand 5
A
480 487anti-parallel
Strand 6
A
444 451anti-parallel
Strand 7
A
460 466anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 48first strand
Strand 2
A
86 91parallel
Strand 3
A
154 159parallel
Strand 4
A
209 213parallel
Strand 5
A
259 265parallel
Strand 6
A
288 292parallel
Strand 7
A
315 321parallel
Strand 8
A
346 349parallel
Strand 9
A
44 48parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 74first strand
Strand 2
A
77 80anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 354first strand
Strand 2
A
362 364parallel
Strand 3
A
371 374anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 437first strand
Strand 2
A
489 490anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il