Analysis of interatomic Contacts of Structural Units in PDB entry:
24VD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 24VD entry

There are 3 chains in PDB entry 24VD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 13LYS 604
B
 ARG 13LYS 604
C
 GLY 14LYS 515
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 24VD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 32Right-handed alpha
Helix 2
AA2
A
38 62Right-handed alpha
Helix 3
AA3
A
62 72Right-handed alpha
Helix 4
AA4
A
75 124Right-handed alpha
Helix 5
AA5
A
127 135Right-handed alpha
Helix 6
AA6
A
141 180Right-handed alpha
Helix 7
AA7
A
186 204Right-handed alpha
Helix 8
AA8
A
205 232Right-handed alpha
Helix 9
AA9
A
232 239Right-handed alpha
Helix 10
AB1
A
241 294Right-handed alpha
Helix 11
AB2
A
302 330Right-handed alpha
Helix 12
AB3
A
330 354Right-handed alpha
Helix 13
AB4
A
426 435Right-handed alpha
Helix 14
AB5
A
469 475Right-handed alpha
Helix 15
AB6
A
476 479Right-handed 310
Helix 16
AB7
A
487 500Right-handed alpha
Helix 17
AB8
A
502 510Right-handed alpha
Helix 18
AB9
A
525 541Right-handed alpha
Helix 19
AC1
A
555 569Right-handed alpha
Helix 20
AC2
A
579 586Right-handed 310
Helix 21
AC3
B
17 32Right-handed alpha
Helix 22
AC4
B
37 62Right-handed alpha
Helix 23
AC5
B
62 73Right-handed alpha
Helix 24
AC6
B
75 124Right-handed alpha
Helix 25
AC7
B
127 135Right-handed alpha
Helix 26
AC8
B
141 158Right-handed alpha
Helix 27
AC9
B
160 181Right-handed alpha
Helix 28
AD1
B
186 203Right-handed alpha
Helix 29
AD2
B
205 232Right-handed alpha
Helix 30
AD3
B
232 239Right-handed alpha
Helix 31
AD4
B
241 280Right-handed alpha
Helix 32
AD5
B
280 290Right-handed alpha
Helix 33
AD6
B
302 330Right-handed alpha
Helix 34
AD7
B
330 354Right-handed alpha
Helix 35
AD8
B
426 435Right-handed alpha
Helix 36
AD9
B
469 475Right-handed alpha
Helix 37
AE1
B
476 479Right-handed 310
Helix 38
AE2
B
486 500Right-handed alpha
Helix 39
AE3
B
502 510Right-handed alpha
Helix 40
AE4
B
525 541Right-handed alpha
Helix 41
AE5
B
555 568Right-handed alpha
Helix 42
AE6
B
579 586Right-handed 310
Helix 43
AE7
C
15 37Right-handed alpha
Helix 44
AE8
C
43 72Right-handed alpha
Helix 45
AE9
C
73 75Right-handed 310
Helix 46
AF1
C
88 114Right-handed alpha
Helix 47
AF2
C
114 123Right-handed alpha
Helix 48
AF3
C
134 160Right-handed alpha
Helix 49
AF4
C
188 211Right-handed alpha
Helix 50
AF5
C
211 225Right-handed alpha
Helix 51
AF6
C
235 253Right-handed alpha
Helix 52
AF7
C
262 291Right-handed alpha
Helix 53
AF8
C
304 333Right-handed alpha
Helix 54
AF9
C
350 359Right-handed alpha
Helix 55
AG1
C
360 362Right-handed 310
Helix 56
AG2
C
364 389Right-handed alpha
Helix 57
AG3
C
406 432Right-handed alpha
Helix 58
AG4
C
432 439Right-handed alpha
Helix 59
AG5
C
478 485Right-handed alpha
Helix 60
AG6
C
487 515Right-handed alpha
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There are 7 sheets in PDB entry 24VD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
404 407first strand
Strand 2
A
387 394anti-parallel
Strand 3
A
410 411anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
404 407first strand
Strand 2
A
387 394anti-parallel
Strand 3
A
442 447anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 419first strand
Strand 2
A
573 576parallel
Strand 3
A
544 548parallel
Strand 4
A
456 459parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
404 407first strand
Strand 2
B
387 394anti-parallel
Strand 3
B
410 411anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
404 407first strand
Strand 2
B
387 394anti-parallel
Strand 3
B
442 447anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
417 419first strand
Strand 2
B
573 576parallel
Strand 3
B
544 548parallel
Strand 4
B
456 459parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
390 391first strand
Strand 2
C
396 398anti-parallel
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