Analysis of interatomic Contacts of Structural Units in PDB entry:
24VE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 24VE entry

There are 3 chains in PDB entry 24VE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 13LYS 604
B
 ARG 13LYS 604
C
 VAL 12CYS 513
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 24VE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 32Right-handed alpha
Helix 2
AA2
A
38 62Right-handed alpha
Helix 3
AA3
A
62 74Right-handed alpha
Helix 4
AA4
A
75 125Right-handed alpha
Helix 5
AA5
A
127 135Right-handed alpha
Helix 6
AA6
A
141 148Right-handed alpha
Helix 7
AA7
A
148 183Right-handed alpha
Helix 8
AA8
A
184 232Right-handed alpha
Helix 9
AA9
A
232 240Right-handed alpha
Helix 10
AB1
A
241 267Right-handed alpha
Helix 11
AB2
A
267 296Right-handed alpha
Helix 12
AB3
A
302 355Right-handed alpha
Helix 13
AB4
A
426 435Right-handed alpha
Helix 14
AB5
A
469 475Right-handed alpha
Helix 15
AB6
A
476 479Right-handed 310
Helix 16
AB7
A
486 501Right-handed alpha
Helix 17
AB8
A
502 509Right-handed alpha
Helix 18
AB9
A
525 541Right-handed alpha
Helix 19
AC1
A
557 569Right-handed alpha
Helix 20
AC2
A
579 586Right-handed 310
Helix 21
AC3
B
17 32Right-handed alpha
Helix 22
AC4
B
38 62Right-handed alpha
Helix 23
AC5
B
62 74Right-handed alpha
Helix 24
AC6
B
75 124Right-handed alpha
Helix 25
AC7
B
127 132Right-handed alpha
Helix 26
AC8
B
141 148Right-handed alpha
Helix 27
AC9
B
148 183Right-handed alpha
Helix 28
AD1
B
184 232Right-handed alpha
Helix 29
AD2
B
232 239Right-handed alpha
Helix 30
AD3
B
241 267Right-handed alpha
Helix 31
AD4
B
267 296Right-handed alpha
Helix 32
AD5
B
302 354Right-handed alpha
Helix 33
AD6
B
426 435Right-handed alpha
Helix 34
AD7
B
469 475Right-handed alpha
Helix 35
AD8
B
486 501Right-handed alpha
Helix 36
AD9
B
502 509Right-handed alpha
Helix 37
AE1
B
525 541Right-handed alpha
Helix 38
AE2
B
557 568Right-handed alpha
Helix 39
AE3
B
579 586Right-handed 310
Helix 40
AE4
C
13 37Right-handed alpha
Helix 41
AE5
C
43 73Right-handed alpha
Helix 42
AE6
C
91 114Right-handed alpha
Helix 43
AE7
C
114 123Right-handed alpha
Helix 44
AE8
C
135 161Right-handed alpha
Helix 45
AE9
C
186 225Right-handed alpha
Helix 46
AF1
C
233 253Right-handed alpha
Helix 47
AF2
C
254 258Right-handed 310
Helix 48
AF3
C
262 292Right-handed alpha
Helix 49
AF4
C
293 297Right-handed 310
Helix 50
AF5
C
303 333Right-handed alpha
Helix 51
AF6
C
350 360Right-handed alpha
Helix 52
AF7
C
365 389Right-handed alpha
Helix 53
AF8
C
406 432Right-handed alpha
Helix 54
AF9
C
432 439Right-handed alpha
Helix 55
AG1
C
478 485Right-handed alpha
Helix 56
AG2
C
487 513Right-handed alpha
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There are 5 sheets in PDB entry 24VE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 411first strand
Strand 2
A
387 395anti-parallel
Strand 3
A
444 447anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
546 548first strand
Strand 2
A
574 576parallel
Strand 3
A
417 421parallel
Strand 4
A
588 593parallel
Strand 5
A
597 600anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
387 395first strand
Strand 2
B
402 411anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
575 576first strand
Strand 2
B
418 421parallel
Strand 3
B
590 593parallel
Strand 4
B
597 600anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
390 391first strand
Strand 2
C
396 398anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il