Analysis of interatomic Contacts of Structural Units in PDB entry:
24YE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 24YE entry

There are 9 chains in PDB entry 24YE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 28	GLU 369
B	PRO 28	GLU 369
C	GLU 380	ALA 473
D	GLU 380	ALA 473
E	PRO 28	GLU 369
F	GLU 380	ALA 473
G	ASP 370	ALA 388
H	ASP 370	ALA 388
I	ASP 370	ALA 388

There are 28 helices in PDB entry 24YE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	38	Right-handed alpha
Helix 2	AA2	A	39	41	Right-handed 310
Helix 3	AA3	A	112	117	Right-handed alpha
Helix 4	AA4	A	251	265	Right-handed alpha
Helix 5	AA5	A	280	287	Right-handed alpha
Helix 6	AA6	A	304	309	Right-handed alpha
Helix 7	AA7	A	329	337	Right-handed alpha
Helix 8	AA8	B	30	38	Right-handed alpha
Helix 9	AA9	B	112	117	Right-handed alpha
Helix 10	AB1	B	251	264	Right-handed alpha
Helix 11	AB2	B	280	287	Right-handed alpha
Helix 12	AB3	B	304	310	Right-handed alpha
Helix 13	AB4	B	329	337	Right-handed alpha
Helix 14	AB5	C	394	401	Right-handed alpha
Helix 15	AB6	C	415	420	Right-handed alpha
Helix 16	AB7	C	438	448	Right-handed alpha
Helix 17	AB8	D	394	401	Right-handed alpha
Helix 18	AB9	D	415	420	Right-handed alpha
Helix 19	AC1	D	438	448	Right-handed alpha
Helix 20	AC2	E	30	38	Right-handed alpha
Helix 21	AC3	E	112	117	Right-handed alpha
Helix 22	AC4	E	251	264	Right-handed alpha
Helix 23	AC5	E	280	287	Right-handed alpha
Helix 24	AC6	E	304	310	Right-handed alpha
Helix 25	AC7	E	329	337	Right-handed alpha
Helix 26	AC8	F	394	400	Right-handed alpha
Helix 27	AC9	F	415	420	Right-handed alpha
Helix 28	AD1	F	438	448	Right-handed alpha

There are 24 sheets in PDB entry 24YE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	98	first strand
Strand 2	A	43	48	anti-parallel
Strand 3	A	121	125	anti-parallel
Strand 4	A	131	134	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	104	first strand
Strand 2	A	108	111	anti-parallel
Strand 3	A	145	149	anti-parallel
Strand 4	A	138	140	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	223	first strand
Strand 2	A	171	176	anti-parallel
Strand 3	A	184	192	anti-parallel
Strand 4	A	206	208	anti-parallel
Strand 5	A	246	250	anti-parallel
Strand 6	A	230	235	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	271	first strand
Strand 2	A	362	363	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	324	first strand
Strand 2	A	316	320	anti-parallel
Strand 3	A	343	350	anti-parallel
Strand 4	A	353	360	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	324	first strand
Strand 2	A	316	320	anti-parallel
Strand 3	A	295	300	anti-parallel
Strand 4	A	274	277	anti-parallel
Strand 5	I	387	388	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	134	first strand
Strand 2	B	121	125	anti-parallel
Strand 3	B	43	48	anti-parallel
Strand 4	B	94	97	anti-parallel
Strand 5	I	378	379	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	104	first strand
Strand 2	B	108	111	anti-parallel
Strand 3	B	145	149	anti-parallel
Strand 4	B	138	140	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	160	first strand
Strand 2	B	227	232	parallel
Strand 3	B	220	223	anti-parallel
Strand 4	B	171	176	anti-parallel
Strand 5	B	184	189	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	160	first strand
Strand 2	B	227	232	parallel
Strand 3	B	248	250	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	278	first strand
Strand 2	B	295	300	anti-parallel
Strand 3	B	316	320	anti-parallel
Strand 4	B	323	324	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	278	first strand
Strand 2	B	295	300	anti-parallel
Strand 3	B	316	320	anti-parallel
Strand 4	B	343	350	anti-parallel
Strand 5	B	353	360	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	388	391	first strand
Strand 2	C	407	412	anti-parallel
Strand 3	C	427	431	anti-parallel
Strand 4	C	455	461	anti-parallel
Strand 5	C	464	470	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	388	390	first strand
Strand 2	D	409	412	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	434	435	first strand
Strand 2	D	430	431	anti-parallel
Strand 3	D	454	461	anti-parallel
Strand 4	D	464	471	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	48	first strand
Strand 2	E	94	104	anti-parallel
Strand 3	E	108	111	anti-parallel
Strand 4	E	145	149	anti-parallel
Strand 5	E	131	140	anti-parallel
Strand 6	E	121	125	anti-parallel
Strand 7	E	41	48	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	159	160	first strand
Strand 2	E	227	237	parallel
Strand 3	E	246	250	anti-parallel
Strand 4	E	205	208	anti-parallel
Strand 5	E	190	195	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	187	188	first strand
Strand 2	E	172	174	anti-parallel
Strand 3	E	220	223	anti-parallel
Strand 4	E	227	237	anti-parallel
Strand 5	G	371	373	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	270	271	first strand
Strand 2	E	362	363	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	274	278	first strand
Strand 2	E	295	300	anti-parallel
Strand 3	E	316	320	anti-parallel
Strand 4	E	323	324	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	274	278	first strand
Strand 2	E	295	300	anti-parallel
Strand 3	E	316	320	anti-parallel
Strand 4	E	343	350	anti-parallel
Strand 5	E	353	360	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	381	383	first strand
Strand 2	F	388	390	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	407	408	first strand
Strand 2	F	427	431	anti-parallel
Strand 3	F	434	435	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	407	408	first strand
Strand 2	F	427	431	anti-parallel
Strand 3	F	455	461	anti-parallel
Strand 4	F	464	470	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 24YE

Analysis of interatomic Contacts of Structural Units in PDB entry:
24YE