Analysis of interatomic Contacts of Structural Units in PDB entry:
24YQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 24YQ entry

There are 2 chains in PDB entry 24YQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 414
B
 MET 1ALA 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 24YQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 33Right-handed alpha
Helix 2
AA2
A
53 68Right-handed alpha
Helix 3
AA3
A
87 103Right-handed alpha
Helix 4
AA4
A
116 131Right-handed alpha
Helix 5
AA5
A
187 199Right-handed alpha
Helix 6
AA6
A
200 214Right-handed alpha
Helix 7
AA7
A
233 237Right-handed 310
Helix 8
AA8
A
240 261Right-handed alpha
Helix 9
AA9
A
262 264Right-handed 310
Helix 10
AB1
A
277 282Right-handed 310
Helix 11
AB2
A
283 299Right-handed alpha
Helix 12
AB3
A
305 317Right-handed alpha
Helix 13
AB4
A
345 359Right-handed alpha
Helix 14
AB5
A
363 368Right-handed alpha
Helix 15
AB6
A
369 381Right-handed alpha
Helix 16
AB7
B
16 33Right-handed alpha
Helix 17
AB8
B
53 68Right-handed alpha
Helix 18
AB9
B
87 103Right-handed alpha
Helix 19
AC1
B
116 132Right-handed alpha
Helix 20
AC2
B
187 199Right-handed alpha
Helix 21
AC3
B
200 214Right-handed alpha
Helix 22
AC4
B
233 237Right-handed 310
Helix 23
AC5
B
240 261Right-handed alpha
Helix 24
AC6
B
262 264Right-handed 310
Helix 25
AC7
B
283 301Right-handed alpha
Helix 26
AC8
B
305 317Right-handed alpha
Helix 27
AC9
B
345 359Right-handed alpha
Helix 28
AD1
B
363 368Right-handed alpha
Helix 29
AD2
B
369 381Right-handed alpha
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There are 8 sheets in PDB entry 24YQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
11 12anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 338first strand
Strand 2
A
266 271parallel
Strand 3
A
216 226parallel
Strand 4
A
134 139parallel
Strand 5
A
45 49parallel
Strand 6
A
70 75parallel
Strand 7
A
107 111parallel
Strand 8
A
403 407parallel
Strand 9
A
410 414anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
154 156anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 171first strand
Strand 2
A
178 183anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 8first strand
Strand 2
B
11 12anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
337 338first strand
Strand 2
B
266 271parallel
Strand 3
B
216 226parallel
Strand 4
B
134 139parallel
Strand 5
B
45 49parallel
Strand 6
B
70 75parallel
Strand 7
B
107 111parallel
Strand 8
B
404 407parallel
Strand 9
B
410 413anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 147first strand
Strand 2
B
154 156anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 171first strand
Strand 2
B
178 183anti-parallel
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