Analysis of interatomic Contacts of Structural Units in PDB entry:
24YW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 24YW entry

There are 29 chains in PDB entry 24YW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
2	ALA 2	ALA 55
3	GLY 4	ILE 54
4	THR 16	ALA 59
5	PRO 2	LEU 65
6	MET 34	ARG 74
A	G 1	C 2879
B	C 4	G 120
C	PRO 2	GLY 275
D	LYS 4	ALA 216
E	MET 3	ALA 203
G	SER 2	LYS 173
H	MET 1	GLY 80
J	THR 2	ILE 142
K	MET 1	LEU 122
L	THR 2	GLU 146
M	MET 1	ARG 137
N	MET 1	ARG 118
O	ASN 4	PHE 119
P	LEU 4	ALA 119
Q	ARG 3	ALA 118
R	MET 1	GLY 103
S	MET 1	ALA 109
T	ASN 7	ASP 97
U	ALA 2	LEU 103
V	LYS 3	HIS 191
W	ASN 12	ALA 84
X	SER 2	GLU 76
Y	MET 1	GLY 58
Z	LYS 35	GLU 90

There are 93 helices in PDB entry 24YW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	2	9	15	Right-handed alpha
Helix 2	AA2	4	23	32	Right-handed alpha
Helix 3	AA3	4	32	38	Right-handed alpha
Helix 4	AA4	4	39	53	Right-handed alpha
Helix 5	AA5	5	7	12	Right-handed alpha
Helix 6	AA6	5	37	45	Right-handed alpha
Helix 7	AA7	5	51	62	Right-handed alpha
Helix 8	AA8	6	66	69	Right-handed 310
Helix 9	AA9	C	10	14	Right-handed 310
Helix 10	AB1	C	30	32	Right-handed 310
Helix 11	AB2	C	133	135	Right-handed 310
Helix 12	AB3	C	199	203	Right-handed 310
Helix 13	AB4	C	207	214	Right-handed alpha
Helix 14	AB5	C	221	225	Right-handed 310
Helix 15	AB6	C	265	267	Right-handed 310
Helix 16	AB7	D	44	49	Right-handed alpha
Helix 17	AB8	D	61	65	Right-handed 310
Helix 18	AB9	D	66	77	Right-handed alpha
Helix 19	AC1	D	91	97	Right-handed 310
Helix 20	AC2	D	104	108	Right-handed 310
Helix 21	AC3	D	127	133	Right-handed alpha
Helix 22	AC4	E	17	22	Right-handed alpha
Helix 23	AC5	E	26	40	Right-handed alpha
Helix 24	AC6	E	98	116	Right-handed alpha
Helix 25	AC7	E	131	141	Right-handed alpha
Helix 26	AC8	E	156	163	Right-handed alpha
Helix 27	AC9	E	173	177	Right-handed 310
Helix 28	AD1	E	178	184	Right-handed alpha
Helix 29	AD2	E	192	203	Right-handed alpha
Helix 30	AD3	G	3	7	Right-handed alpha
Helix 31	AD4	G	56	58	Right-handed 310
Helix 32	AD5	G	59	79	Right-handed alpha
Helix 33	AD6	G	135	148	Right-handed alpha
Helix 34	AD7	H	22	29	Right-handed alpha
Helix 35	AD8	H	40	50	Right-handed alpha
Helix 36	AD9	H	51	72	Right-handed alpha
Helix 37	AE1	J	24	38	Right-handed alpha
Helix 38	AE2	J	58	62	Right-handed 310
Helix 39	AE3	J	67	72	Right-handed alpha
Helix 40	AE4	J	89	96	Right-handed alpha
Helix 41	AE5	J	97	107	Right-handed alpha
Helix 42	AE6	J	112	120	Right-handed alpha
Helix 43	AE7	J	132	136	Right-handed 310
Helix 44	AE8	K	103	107	Right-handed 310
Helix 45	AE9	K	111	118	Right-handed alpha
Helix 46	AF1	L	59	64	Right-handed alpha
Helix 47	AF2	L	82	86	Right-handed alpha
Helix 48	AF3	L	94	101	Right-handed alpha
Helix 49	AF4	L	131	141	Right-handed alpha
Helix 50	AF5	M	44	59	Right-handed alpha
Helix 51	AF6	M	110	123	Right-handed alpha
Helix 52	AF7	N	13	32	Right-handed alpha
Helix 53	AF8	N	38	56	Right-handed alpha
Helix 54	AF9	N	59	71	Right-handed alpha
Helix 55	AG1	N	72	82	Right-handed alpha
Helix 56	AG2	N	82	87	Right-handed alpha
Helix 57	AG3	O	5	24	Right-handed alpha
Helix 58	AG4	O	57	62	Right-handed alpha
Helix 59	AG5	O	69	87	Right-handed alpha
Helix 60	AG6	O	103	115	Right-handed alpha
Helix 61	AG7	P	6	15	Right-handed alpha
Helix 62	AG8	P	57	60	Right-handed 310
Helix 63	AG9	P	101	107	Right-handed 310
Helix 64	AH1	P	108	113	Right-handed 310
Helix 65	AH2	Q	7	21	Right-handed alpha
Helix 66	AH3	Q	26	31	Right-handed alpha
Helix 67	AH4	Q	31	73	Right-handed alpha
Helix 68	AH5	Q	75	87	Right-handed alpha
Helix 69	AH6	Q	91	102	Right-handed alpha
Helix 70	AH7	Q	102	118	Right-handed alpha
Helix 71	AH8	R	50	54	Right-handed 310
Helix 72	AH9	S	13	22	Right-handed alpha
Helix 73	AI1	S	28	38	Right-handed alpha
Helix 74	AI2	S	41	62	Right-handed alpha
Helix 75	AI3	S	89	91	Right-handed 310
Helix 76	AI4	T	8	12	Right-handed 310
Helix 77	AI5	T	20	31	Right-handed alpha
Helix 78	AI6	T	42	55	Right-handed alpha
Helix 79	AI7	V	17	26	Right-handed alpha
Helix 80	AI8	V	47	54	Right-handed alpha
Helix 81	AI9	V	55	60	Right-handed 310
Helix 82	AJ1	V	117	122	Right-handed alpha
Helix 83	AJ2	V	139	143	Right-handed 310
Helix 84	AJ3	V	161	165	Right-handed 310
Helix 85	AJ4	V	174	179	Right-handed alpha
Helix 86	AJ5	V	180	183	Right-handed 310
Helix 87	AJ6	X	53	63	Right-handed alpha
Helix 88	AJ7	X	63	74	Right-handed alpha
Helix 89	AJ8	Y	2	7	Right-handed alpha
Helix 90	AJ9	Y	10	35	Right-handed alpha
Helix 91	AK1	Y	40	58	Right-handed alpha
Helix 92	AK2	Z	49	59	Right-handed alpha
Helix 93	AK3	Z	73	83	Right-handed alpha

There are 48 sheets in PDB entry 24YW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	27	29	first strand
Strand 2	2	36	38	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	47	48	first strand
Strand 2	2	51	52	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	20	25	first strand
Strand 2	3	7	13	anti-parallel
Strand 3	3	45	53	anti-parallel
Strand 4	3	35	40	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	15	16	first strand
Strand 2	5	22	24	anti-parallel
Strand 3	5	48	49	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	35	37	first strand
Strand 2	6	71	73	parallel
Strand 3	6	58	62	anti-parallel
Strand 4	6	51	55	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	17	19	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	35	first strand
Strand 2	C	62	63	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	105	first strand
Strand 2	C	91	96	anti-parallel
Strand 3	C	76	82	anti-parallel
Strand 4	C	115	116	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	131	first strand
Strand 2	C	189	192	anti-parallel
Strand 3	C	140	142	anti-parallel
Strand 4	C	162	168	anti-parallel
Strand 5	C	171	175	anti-parallel
Strand 6	C	181	185	anti-parallel
Strand 7	C	269	271	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	145	first strand
Strand 2	C	152	154	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	20	first strand
Strand 2	D	26	33	anti-parallel
Strand 3	D	193	197	anti-parallel
Strand 4	D	176	188	anti-parallel
Strand 5	D	113	119	anti-parallel
Strand 6	D	207	212	anti-parallel
Strand 7	D	9	20	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	88	first strand
Strand 2	D	52	57	anti-parallel
Strand 3	D	37	43	anti-parallel
Strand 4	D	102	103	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	126	first strand
Strand 2	D	170	173	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	6	first strand
Strand 2	E	13	15	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	122	first strand
Strand 2	E	187	191	parallel
Strand 3	E	148	151	parallel
Strand 4	E	170	172	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	10	first strand
Strand 2	G	49	54	anti-parallel
Strand 3	G	41	46	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	16	20	first strand
Strand 2	G	23	28	anti-parallel
Strand 3	G	31	35	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	119	122	first strand
Strand 2	G	128	133	anti-parallel
Strand 3	G	81	88	anti-parallel
Strand 4	G	159	162	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	93	97	first strand
Strand 2	G	100	104	anti-parallel
Strand 3	G	111	114	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	20	first strand
Strand 2	H	2	5	anti-parallel
Strand 3	H	36	38	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	122	124	first strand
Strand 2	J	53	57	parallel
Strand 3	J	15	19	parallel
Strand 4	J	138	139	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	73	76	first strand
Strand 2	J	85	88	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	7	10	first strand
Strand 2	K	16	24	anti-parallel
Strand 3	K	38	46	anti-parallel
Strand 4	K	57	64	anti-parallel
Strand 5	K	83	87	anti-parallel
Strand 6	K	7	10	parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	69	70	first strand
Strand 2	K	76	79	anti-parallel
Strand 3	P	72	79	anti-parallel
Strand 4	P	62	69	anti-parallel
Strand 5	P	41	55	anti-parallel
Strand 6	P	29	38	anti-parallel
Strand 7	P	85	92	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	77	81	first strand
Strand 2	L	110	114	parallel
Strand 3	L	129	130	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	91	93	first strand
Strand 2	L	123	125	parallel
Strand 3	L	144	145	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	63	66	first strand
Strand 2	M	102	107	anti-parallel
Strand 3	M	32	36	anti-parallel
Strand 4	M	129	133	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	40	43	first strand
Strand 2	M	89	97	anti-parallel
Strand 3	M	72	76	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	33	37	first strand
Strand 2	N	109	115	anti-parallel
Strand 3	N	95	102	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	49	54	first strand
Strand 2	O	37	42	anti-parallel
Strand 3	O	26	32	anti-parallel
Strand 4	O	92	95	parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	10	14	first strand
Strand 2	R	2	7	anti-parallel
Strand 3	R	38	42	anti-parallel
Strand 4	R	47	48	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	19	22	first strand
Strand 2	R	91	101	anti-parallel
Strand 3	R	57	67	anti-parallel
Strand 4	R	32	35	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	71	77	first strand
Strand 2	R	82	88	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	2	10	first strand
Strand 2	S	101	108	anti-parallel
Strand 3	S	70	78	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	82	87	first strand
Strand 2	S	93	98	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	14	17	first strand
Strand 2	T	32	37	anti-parallel
Strand 3	T	83	90	anti-parallel
Strand 4	T	58	66	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	70	73	first strand
Strand 2	T	76	79	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	64	65	first strand
Strand 2	U	32	35	anti-parallel
Strand 3	U	22	29	anti-parallel
Strand 4	U	10	13	anti-parallel
Strand 5	U	69	71	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	40	45	first strand
Strand 2	U	56	61	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	82	86	first strand
Strand 2	U	92	96	anti-parallel

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There are 7 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	6	11	first strand
Strand 2	V	41	46	anti-parallel
Strand 3	V	28	34	anti-parallel
Strand 4	V	89	96	parallel
Strand 5	V	71	82	anti-parallel
Strand 6	V	64	68	anti-parallel
Strand 7	V	6	11	parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	133	138	first strand
Strand 2	V	103	112	anti-parallel
Strand 3	V	147	150	parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	126	129	first strand
Strand 2	V	187	190	anti-parallel
Strand 3	V	159	160	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	22	23	first strand
Strand 2	W	36	39	anti-parallel
Strand 3	W	59	61	anti-parallel
Strand 4	W	51	53	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	30	31	first strand
Strand 2	W	65	72	anti-parallel
Strand 3	W	77	83	anti-parallel
Strand 4	W	46	47	parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	13	18	first strand
Strand 2	X	24	29	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	33	40	first strand
Strand 2	X	45	52	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	67	71	first strand
Strand 2	Z	36	41	anti-parallel
Strand 3	Z	87	90	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 24YW

Analysis of interatomic Contacts of Structural Units in PDB entry:
24YW