Analysis of interatomic Contacts of Structural Units in PDB entry:
25JN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 25JN entry

There are 2 chains in PDB entry 25JN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 55LEU 785
B
 TRP 55LEU 785
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 25JN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 66Right-handed alpha
Helix 2
AA2
A
72 76Right-handed 310
Helix 3
AA3
A
79 85Right-handed alpha
Helix 4
AA4
A
91 109Right-handed alpha
Helix 5
AA5
A
117 121Right-handed 310
Helix 6
AA6
A
128 141Right-handed alpha
Helix 7
AA7
A
168 179Right-handed alpha
Helix 8
AA8
A
180 201Right-handed alpha
Helix 9
AA9
A
203 214Right-handed alpha
Helix 10
AB1
A
217 221Right-handed 310
Helix 11
AB2
A
222 236Right-handed alpha
Helix 12
AB3
A
250 272Right-handed alpha
Helix 13
AB4
A
274 282Right-handed 310
Helix 14
AB5
A
284 294Right-handed alpha
Helix 15
AB6
A
294 300Right-handed alpha
Helix 16
AB7
A
300 305Right-handed alpha
Helix 17
AB8
A
306 308Right-handed 310
Helix 18
AB9
A
311 317Right-handed alpha
Helix 19
AC1
A
322 352Right-handed alpha
Helix 20
AC2
A
358 363Right-handed alpha
Helix 21
AC3
A
364 367Right-handed 310
Helix 22
AC4
A
368 401Right-handed alpha
Helix 23
AC5
A
422 440Right-handed alpha
Helix 24
AC6
A
445 472Right-handed alpha
Helix 25
AC7
A
476 500Right-handed alpha
Helix 26
AC8
A
507 537Right-handed alpha
Helix 27
AC9
A
542 549Right-handed alpha
Helix 28
AD1
A
571 582Right-handed alpha
Helix 29
AD2
A
634 654Right-handed alpha
Helix 30
AD3
A
717 727Right-handed alpha
Helix 31
AD4
A
744 753Right-handed alpha
Helix 32
AD5
A
753 761Right-handed alpha
Helix 33
AD6
A
764 769Right-handed alpha
Helix 34
AD7
A
772 774Right-handed 310
Helix 35
AD8
B
56 66Right-handed alpha
Helix 36
AD9
B
70 75Right-handed alpha
Helix 37
AE1
B
79 85Right-handed alpha
Helix 38
AE2
B
91 109Right-handed alpha
Helix 39
AE3
B
117 121Right-handed 310
Helix 40
AE4
B
128 141Right-handed alpha
Helix 41
AE5
B
169 179Right-handed alpha
Helix 42
AE6
B
180 201Right-handed alpha
Helix 43
AE7
B
203 214Right-handed alpha
Helix 44
AE8
B
217 221Right-handed 310
Helix 45
AE9
B
222 236Right-handed alpha
Helix 46
AF1
B
250 272Right-handed alpha
Helix 47
AF2
B
274 282Right-handed 310
Helix 48
AF3
B
284 294Right-handed alpha
Helix 49
AF4
B
294 300Right-handed alpha
Helix 50
AF5
B
300 305Right-handed alpha
Helix 51
AF6
B
306 308Right-handed 310
Helix 52
AF7
B
311 317Right-handed alpha
Helix 53
AF8
B
322 352Right-handed alpha
Helix 54
AF9
B
358 363Right-handed alpha
Helix 55
AG1
B
365 367Right-handed 310
Helix 56
AG2
B
368 401Right-handed alpha
Helix 57
AG3
B
422 438Right-handed alpha
Helix 58
AG4
B
445 473Right-handed alpha
Helix 59
AG5
B
476 500Right-handed alpha
Helix 60
AG6
B
506 537Right-handed alpha
Helix 61
AG7
B
540 549Right-handed alpha
Helix 62
AG8
B
571 582Right-handed alpha
Helix 63
AG9
B
634 652Right-handed alpha
Helix 64
AH1
B
717 727Right-handed alpha
Helix 65
AH2
B
744 753Right-handed alpha
Helix 66
AH3
B
753 761Right-handed alpha
Helix 67
AH4
B
764 769Right-handed alpha
Helix 68
AH5
B
772 774Right-handed 310
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There are 3 sheets in PDB entry 25JN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 411first strand
Strand 2
A
420 421anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
608 611first strand
Strand 2
A
619 626anti-parallel
Strand 3
A
583 595parallel
Strand 4
A
554 563parallel
Strand 5
A
728 739parallel
Strand 6
A
776 785parallel
Strand 7
B
776 785anti-parallel
Strand 8
B
728 739parallel
Strand 9
B
554 563parallel
Strand 10
B
583 595parallel
Strand 11
B
619 626parallel
Strand 12
B
608 611anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
410 411first strand
Strand 2
B
420 421anti-parallel
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