Analysis of interatomic Contacts of Structural Units in PDB entry:
25JP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 25JP entry

There are 2 chains in PDB entry 25JP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 55LEU 785
B
 TRP 55LEU 785
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 25JP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 65Right-handed alpha
Helix 2
AA2
A
66 68Right-handed 310
Helix 3
AA3
A
80 85Right-handed alpha
Helix 4
AA4
A
92 109Right-handed alpha
Helix 5
AA5
A
117 121Right-handed 310
Helix 6
AA6
A
128 138Right-handed alpha
Helix 7
AA7
A
151 155Right-handed 310
Helix 8
AA8
A
171 179Right-handed alpha
Helix 9
AA9
A
182 198Right-handed alpha
Helix 10
AB1
A
203 214Right-handed alpha
Helix 11
AB2
A
217 221Right-handed 310
Helix 12
AB3
A
224 230Right-handed alpha
Helix 13
AB4
A
251 269Right-handed alpha
Helix 14
AB5
A
275 282Right-handed 310
Helix 15
AB6
A
284 294Right-handed alpha
Helix 16
AB7
A
300 305Right-handed alpha
Helix 17
AB8
A
306 309Right-handed 310
Helix 18
AB9
A
315 319Right-handed 310
Helix 19
AC1
A
322 349Right-handed alpha
Helix 20
AC2
A
355 357Right-handed 310
Helix 21
AC3
A
358 363Right-handed alpha
Helix 22
AC4
A
364 367Right-handed 310
Helix 23
AC5
A
368 402Right-handed alpha
Helix 24
AC6
A
422 441Right-handed alpha
Helix 25
AC7
A
446 472Right-handed alpha
Helix 26
AC8
A
476 500Right-handed alpha
Helix 27
AC9
A
513 537Right-handed alpha
Helix 28
AD1
A
540 549Right-handed alpha
Helix 29
AD2
A
571 582Right-handed alpha
Helix 30
AD3
A
634 654Right-handed alpha
Helix 31
AD4
A
720 727Right-handed alpha
Helix 32
AD5
A
744 753Right-handed alpha
Helix 33
AD6
A
753 761Right-handed alpha
Helix 34
AD7
A
764 768Right-handed 310
Helix 35
AD8
A
772 774Right-handed 310
Helix 36
AD9
B
56 65Right-handed alpha
Helix 37
AE1
B
66 68Right-handed 310
Helix 38
AE2
B
80 85Right-handed alpha
Helix 39
AE3
B
92 109Right-handed alpha
Helix 40
AE4
B
117 121Right-handed 310
Helix 41
AE5
B
128 141Right-handed alpha
Helix 42
AE6
B
151 155Right-handed 310
Helix 43
AE7
B
168 179Right-handed alpha
Helix 44
AE8
B
180 201Right-handed alpha
Helix 45
AE9
B
203 214Right-handed alpha
Helix 46
AF1
B
217 221Right-handed 310
Helix 47
AF2
B
224 230Right-handed alpha
Helix 48
AF3
B
251 269Right-handed alpha
Helix 49
AF4
B
275 282Right-handed 310
Helix 50
AF5
B
284 294Right-handed alpha
Helix 51
AF6
B
303 309Right-handed 310
Helix 52
AF7
B
312 317Right-handed alpha
Helix 53
AF8
B
322 349Right-handed alpha
Helix 54
AF9
B
355 357Right-handed 310
Helix 55
AG1
B
358 363Right-handed alpha
Helix 56
AG2
B
364 367Right-handed 310
Helix 57
AG3
B
368 402Right-handed alpha
Helix 58
AG4
B
422 441Right-handed alpha
Helix 59
AG5
B
445 472Right-handed alpha
Helix 60
AG6
B
476 500Right-handed alpha
Helix 61
AG7
B
513 537Right-handed alpha
Helix 62
AG8
B
540 549Right-handed alpha
Helix 63
AG9
B
571 582Right-handed alpha
Helix 64
AH1
B
634 654Right-handed alpha
Helix 65
AH2
B
720 727Right-handed alpha
Helix 66
AH3
B
744 753Right-handed alpha
Helix 67
AH4
B
753 761Right-handed alpha
Helix 68
AH5
B
764 768Right-handed 310
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There are 4 sheets in PDB entry 25JP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 411first strand
Strand 2
A
420 421anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
608 611first strand
Strand 2
A
619 626anti-parallel
Strand 3
A
583 595parallel
Strand 4
A
554 563parallel
Strand 5
A
728 739parallel
Strand 6
A
776 785parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
410 411first strand
Strand 2
B
420 421anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
608 611first strand
Strand 2
B
619 626anti-parallel
Strand 3
B
583 595parallel
Strand 4
B
554 563parallel
Strand 5
B
728 739parallel
Strand 6
B
776 785parallel
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