Analysis of interatomic Contacts of Structural Units in PDB entry:
25MJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 25MJ entry

There are 2 chains in PDB entry 25MJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 55LEU 785
B
 TRP 55LEU 785
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 83 helices in PDB entry 25MJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 64Right-handed alpha
Helix 2
AA2
A
65 67Right-handed 310
Helix 3
AA3
A
75 79Right-handed 310
Helix 4
AA4
A
80 85Right-handed alpha
Helix 5
AA5
A
98 110Right-handed alpha
Helix 6
AA6
A
117 121Right-handed 310
Helix 7
AA7
A
129 140Right-handed alpha
Helix 8
AA8
A
168 178Right-handed alpha
Helix 9
AA9
A
182 192Right-handed alpha
Helix 10
AB1
A
192 201Right-handed alpha
Helix 11
AB2
A
205 210Right-handed alpha
Helix 12
AB3
A
213 218Right-handed 310
Helix 13
AB4
A
224 237Right-handed alpha
Helix 14
AB5
A
254 262Right-handed alpha
Helix 15
AB6
A
275 283Right-handed 310
Helix 16
AB7
A
284 291Right-handed alpha
Helix 17
AB8
A
294 300Right-handed alpha
Helix 18
AB9
A
300 305Right-handed alpha
Helix 19
AC1
A
306 309Right-handed 310
Helix 20
AC2
A
310 311Right-handed 310
Helix 21
AC3
A
312 317Right-handed alpha
Helix 22
AC4
A
358 364Right-handed alpha
Helix 23
AC5
A
365 369Right-handed 310
Helix 24
AC6
A
370 399Right-handed alpha
Helix 25
AC7
A
400 402Right-handed 310
Helix 26
AC8
A
422 426Right-handed 310
Helix 27
AC9
A
429 441Right-handed alpha
Helix 28
AD1
A
445 450Right-handed alpha
Helix 29
AD2
A
455 472Right-handed alpha
Helix 30
AD3
A
476 490Right-handed alpha
Helix 31
AD4
A
492 500Right-handed alpha
Helix 32
AD5
A
507 513Right-handed alpha
Helix 33
AD6
A
520 534Right-handed alpha
Helix 34
AD7
A
571 575Right-handed 310
Helix 35
AD8
A
576 581Right-handed alpha
Helix 36
AD9
A
634 654Right-handed alpha
Helix 37
AE1
A
718 727Right-handed alpha
Helix 38
AE2
A
746 753Right-handed alpha
Helix 39
AE3
A
753 762Right-handed alpha
Helix 40
AE4
A
764 769Right-handed alpha
Helix 41
AE5
A
772 774Right-handed 310
Helix 42
AE6
B
59 64Right-handed alpha
Helix 43
AE7
B
65 70Right-handed alpha
Helix 44
AE8
B
80 85Right-handed alpha
Helix 45
AE9
B
99 104Right-handed alpha
Helix 46
AF1
B
117 121Right-handed 310
Helix 47
AF2
B
132 137Right-handed alpha
Helix 48
AF3
B
168 175Right-handed alpha
Helix 49
AF4
B
182 192Right-handed alpha
Helix 50
AF5
B
192 197Right-handed alpha
Helix 51
AF6
B
206 211Right-handed alpha
Helix 52
AF7
B
217 221Right-handed 310
Helix 53
AF8
B
228 237Right-handed alpha
Helix 54
AF9
B
254 262Right-handed alpha
Helix 55
AG1
B
277 281Right-handed 310
Helix 56
AG2
B
282 284Right-handed 310
Helix 57
AG3
B
285 294Right-handed alpha
Helix 58
AG4
B
300 305Right-handed alpha
Helix 59
AG5
B
306 309Right-handed 310
Helix 60
AG6
B
312 317Right-handed alpha
Helix 61
AG7
B
322 327Right-handed alpha
Helix 62
AG8
B
335 343Right-handed alpha
Helix 63
AG9
B
360 364Right-handed 310
Helix 64
AH1
B
368 383Right-handed alpha
Helix 65
AH2
B
387 399Right-handed alpha
Helix 66
AH3
B
422 434Right-handed alpha
Helix 67
AH4
B
436 441Right-handed alpha
Helix 68
AH5
B
444 467Right-handed alpha
Helix 69
AH6
B
467 472Right-handed alpha
Helix 70
AH7
B
477 490Right-handed alpha
Helix 71
AH8
B
492 497Right-handed alpha
Helix 72
AH9
B
498 502Right-handed 310
Helix 73
AI1
B
511 516Right-handed alpha
Helix 74
AI2
B
519 537Right-handed alpha
Helix 75
AI3
B
544 549Right-handed alpha
Helix 76
AI4
B
573 582Right-handed alpha
Helix 77
AI5
B
634 653Right-handed alpha
Helix 78
AI6
B
718 723Right-handed alpha
Helix 79
AI7
B
724 726Right-handed 310
Helix 80
AI8
B
746 751Right-handed alpha
Helix 81
AI9
B
753 761Right-handed alpha
Helix 82
AJ1
B
764 769Right-handed alpha
Helix 83
AJ2
B
772 774Right-handed 310
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There are 3 sheets in PDB entry 25MJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 411first strand
Strand 2
A
420 421anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
607 611first strand
Strand 2
A
619 626anti-parallel
Strand 3
A
583 595parallel
Strand 4
A
554 563parallel
Strand 5
A
728 739parallel
Strand 6
A
776 785parallel
Strand 7
B
776 785anti-parallel
Strand 8
B
728 739parallel
Strand 9
B
554 563parallel
Strand 10
B
583 594parallel
Strand 11
B
619 625parallel
Strand 12
B
607 611anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
410 411first strand
Strand 2
B
420 421anti-parallel
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