Analysis of interatomic Contacts of Structural Units in PDB entry:
25RV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 25RV entry

There are 2 chains in PDB entry 25RV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PHE 286
B	MET 1	PRO 420

There are 26 helices in PDB entry 25RV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	53	55	Right-handed 310
Helix 2	AA2	A	76	87	Right-handed alpha
Helix 3	AA3	A	107	118	Right-handed alpha
Helix 4	AA4	A	177	185	Right-handed alpha
Helix 5	AA5	A	194	203	Right-handed alpha
Helix 6	AA6	A	232	246	Right-handed alpha
Helix 7	AA7	A	247	250	Right-handed 310
Helix 8	AA8	A	263	277	Right-handed alpha
Helix 9	AA9	B	21	31	Right-handed alpha
Helix 10	AB1	B	32	34	Right-handed 310
Helix 11	AB2	B	47	60	Right-handed alpha
Helix 12	AB3	B	75	79	Right-handed 310
Helix 13	AB4	B	85	90	Right-handed alpha
Helix 14	AB5	B	91	97	Right-handed 310
Helix 15	AB6	B	98	107	Right-handed alpha
Helix 16	AB7	B	124	133	Right-handed alpha
Helix 17	AB8	B	165	177	Right-handed alpha
Helix 18	AB9	B	191	205	Right-handed alpha
Helix 19	AC1	B	234	249	Right-handed alpha
Helix 20	AC2	B	258	261	Right-handed 310
Helix 21	AC3	B	262	273	Right-handed alpha
Helix 22	AC4	B	309	318	Right-handed alpha
Helix 23	AC5	B	336	344	Right-handed alpha
Helix 24	AC6	B	372	385	Right-handed alpha
Helix 25	AC7	B	395	400	Right-handed alpha
Helix 26	AC8	B	404	412	Right-handed alpha

There are 13 sheets in PDB entry 25RV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	119	125	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	51	first strand
Strand 2	A	37	41	anti-parallel
Strand 3	A	91	95	parallel
Strand 4	A	23	29	anti-parallel
Strand 5	A	11	16	anti-parallel
Strand 6	B	65	66	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	59	first strand
Strand 2	A	65	68	anti-parallel
Strand 3	A	71	73	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	139	first strand
Strand 2	A	142	147	anti-parallel
Strand 3	A	252	260	anti-parallel
Strand 4	A	152	157	parallel
Strand 5	A	171	175	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	139	first strand
Strand 2	A	142	147	anti-parallel
Strand 3	A	252	260	anti-parallel
Strand 4	A	128	131	parallel
Strand 5	A	281	284	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	193	first strand
Strand 2	A	215	217	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	364	first strand
Strand 2	B	386	393	parallel
Strand 3	B	367	369	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	364	first strand
Strand 2	B	386	393	parallel
Strand 3	B	3	8	anti-parallel
Strand 4	B	415	417	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	17	first strand
Strand 2	B	251	255	parallel
Strand 3	B	282	286	anti-parallel
Strand 4	B	277	278	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	74	first strand
Strand 2	B	39	42	anti-parallel
Strand 3	B	228	230	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	84	first strand
Strand 2	B	108	112	parallel
Strand 3	B	144	148	anti-parallel
Strand 4	B	137	140	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	160	first strand
Strand 2	B	182	186	parallel
Strand 3	B	215	219	anti-parallel
Strand 4	B	208	209	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	298	first strand
Strand 2	B	323	327	parallel
Strand 3	B	354	358	anti-parallel
Strand 4	B	347	351	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 25RV

Analysis of interatomic Contacts of Structural Units in PDB entry:
25RV