Analysis of interatomic Contacts of Structural Units in PDB entry:
25TV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 25TV entry

There are 3 chains in PDB entry 25TV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 40ASP 578
B
 PRO 40GLN 577
C
 ASP 28TYR 229
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 25TV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
75 90Right-handed alpha
Helix 2
AA2
A
111 124Right-handed alpha
Helix 3
AA3
A
160 172Right-handed alpha
Helix 4
AA4
A
183 188Right-handed 310
Helix 5
AA5
A
201 216Right-handed alpha
Helix 6
AA6
A
229 245Right-handed alpha
Helix 7
AA7
A
255 260Right-handed alpha
Helix 8
AA8
A
266 275Right-handed alpha
Helix 9
AA9
A
288 302Right-handed alpha
Helix 10
AB1
A
343 352Right-handed alpha
Helix 11
AB2
A
363 373Right-handed alpha
Helix 12
AB3
A
407 429Right-handed alpha
Helix 13
AB4
A
437 443Right-handed alpha
Helix 14
AB5
A
444 454Right-handed alpha
Helix 15
AB6
B
75 91Right-handed alpha
Helix 16
AB7
B
111 124Right-handed alpha
Helix 17
AB8
B
125 127Right-handed 310
Helix 18
AB9
B
159 172Right-handed alpha
Helix 19
AC1
B
183 187Right-handed 310
Helix 20
AC2
B
201 217Right-handed alpha
Helix 21
AC3
B
228 246Right-handed alpha
Helix 22
AC4
B
263 277Right-handed alpha
Helix 23
AC5
B
288 302Right-handed alpha
Helix 24
AC6
B
326 331Right-handed alpha
Helix 25
AC7
B
343 352Right-handed alpha
Helix 26
AC8
B
363 372Right-handed alpha
Helix 27
AC9
B
395 400Right-handed alpha
Helix 28
AD1
B
407 430Right-handed alpha
Helix 29
AD2
B
437 443Right-handed alpha
Helix 30
AD3
B
445 453Right-handed alpha
Helix 31
AD4
B
505 509Right-handed 310
Helix 32
AD5
C
76 82Right-handed alpha
Helix 33
AD6
C
195 197Right-handed 310
Helix 34
AD7
C
198 209Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 25TV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 107first strand
Strand 2
A
49 55parallel
Strand 3
A
150 155parallel
Strand 4
A
176 178parallel
Strand 5
A
196 197parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 221first strand
Strand 2
A
249 250parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 283first strand
Strand 2
A
309 310parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 338first strand
Strand 2
A
477 482anti-parallel
Strand 3
A
496 498anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 458first strand
Strand 2
A
464 466anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
568 569first strand
Strand 2
A
576 577anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 44first strand
Strand 2
B
101 107anti-parallel
Strand 3
B
49 55parallel
Strand 4
B
150 153parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 256first strand
Strand 2
B
222 226parallel
Strand 3
B
283 284parallel
Strand 4
B
310 311parallel
Strand 5
B
333 338parallel
Strand 6
B
477 481anti-parallel
Strand 7
B
493 498anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 44first strand
Strand 2
C
64 67parallel
Strand 3
C
88 91parallel
Strand 4
C
112 114parallel
Strand 5
C
136 138parallel
Strand 6
C
160 162parallel
Strand 7
C
184 186parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il