Analysis of interatomic Contacts of Structural Units in PDB entry:
25VJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 25VJ entry

There are 12 chains in PDB entry 25VJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	GLN 919	SER 1028
A	ALA 2	ASN 363
B	ALA 2	ASN 363
C	ALA 2	ASN 363
E	GLN 919	SER 1028
F	ALA 2	ASN 363
G	ALA 2	ASN 363
H	ALA 2	ASN 363
I	GLN 919	SER 1028
J	ALA 2	ASN 363
K	ALA 2	ASN 363
L	ALA 2	ASN 363

There are 63 helices in PDB entry 25VJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	919	953	Right-handed alpha
Helix 2	AA2	D	955	1028	Right-handed alpha
Helix 3	AA3	A	24	29	Right-handed alpha
Helix 4	AA4	A	77	93	Right-handed alpha
Helix 5	AA5	A	93	99	Right-handed alpha
Helix 6	AA6	A	101	105	Right-handed 310
Helix 7	AA7	A	108	117	Right-handed alpha
Helix 8	AA8	A	119	128	Right-handed alpha
Helix 9	AA9	A	130	139	Right-handed alpha
Helix 10	AB1	B	82	99	Right-handed alpha
Helix 11	AB2	B	100	105	Right-handed 310
Helix 12	AB3	B	108	117	Right-handed alpha
Helix 13	AB4	B	119	128	Right-handed alpha
Helix 14	AB5	B	130	139	Right-handed alpha
Helix 15	AB6	B	226	230	Right-handed 310
Helix 16	AB7	C	24	29	Right-handed alpha
Helix 17	AB8	C	77	99	Right-handed alpha
Helix 18	AB9	C	101	105	Right-handed 310
Helix 19	AC1	C	108	116	Right-handed alpha
Helix 20	AC2	C	119	127	Right-handed alpha
Helix 21	AC3	C	130	139	Right-handed alpha
Helix 22	AC4	E	920	953	Right-handed alpha
Helix 23	AC5	E	955	1027	Right-handed alpha
Helix 24	AC6	F	24	29	Right-handed alpha
Helix 25	AC7	F	77	93	Right-handed alpha
Helix 26	AC8	F	93	99	Right-handed alpha
Helix 27	AC9	F	101	105	Right-handed 310
Helix 28	AD1	F	108	117	Right-handed alpha
Helix 29	AD2	F	119	128	Right-handed alpha
Helix 30	AD3	F	130	139	Right-handed alpha
Helix 31	AD4	G	82	99	Right-handed alpha
Helix 32	AD5	G	100	105	Right-handed 310
Helix 33	AD6	G	108	117	Right-handed alpha
Helix 34	AD7	G	119	128	Right-handed alpha
Helix 35	AD8	G	130	139	Right-handed alpha
Helix 36	AD9	G	226	230	Right-handed 310
Helix 37	AE1	H	24	29	Right-handed alpha
Helix 38	AE2	H	77	99	Right-handed alpha
Helix 39	AE3	H	101	105	Right-handed 310
Helix 40	AE4	H	108	116	Right-handed alpha
Helix 41	AE5	H	119	127	Right-handed alpha
Helix 42	AE6	H	130	139	Right-handed alpha
Helix 43	AE7	I	920	953	Right-handed alpha
Helix 44	AE8	I	955	1027	Right-handed alpha
Helix 45	AE9	J	24	29	Right-handed alpha
Helix 46	AF1	J	77	93	Right-handed alpha
Helix 47	AF2	J	93	99	Right-handed alpha
Helix 48	AF3	J	101	105	Right-handed 310
Helix 49	AF4	J	108	117	Right-handed alpha
Helix 50	AF5	J	119	128	Right-handed alpha
Helix 51	AF6	J	130	139	Right-handed alpha
Helix 52	AF7	K	82	99	Right-handed alpha
Helix 53	AF8	K	100	105	Right-handed 310
Helix 54	AF9	K	108	117	Right-handed alpha
Helix 55	AG1	K	119	128	Right-handed alpha
Helix 56	AG2	K	130	139	Right-handed alpha
Helix 57	AG3	K	226	230	Right-handed 310
Helix 58	AG4	L	24	29	Right-handed alpha
Helix 59	AG5	L	77	99	Right-handed alpha
Helix 60	AG6	L	101	105	Right-handed 310
Helix 61	AG7	L	108	116	Right-handed alpha
Helix 62	AG8	L	119	127	Right-handed alpha
Helix 63	AG9	L	130	139	Right-handed alpha

There are 49 sheets in PDB entry 25VJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	68	first strand
Strand 2	A	8	11	anti-parallel
Strand 3	A	17	21	anti-parallel
Strand 4	A	53	57	anti-parallel
Strand 5	A	42	47	anti-parallel
Strand 6	A	34	36	anti-parallel
Strand 7	A	71	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	154	first strand
Strand 2	A	165	169	parallel
Strand 3	A	182	188	anti-parallel
Strand 4	A	194	201	anti-parallel
Strand 5	A	208	214	anti-parallel
Strand 6	A	217	218	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	154	first strand
Strand 2	A	165	169	parallel
Strand 3	A	182	188	anti-parallel
Strand 4	A	194	201	anti-parallel
Strand 5	A	208	214	anti-parallel
Strand 6	A	222	223	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	252	first strand
Strand 2	A	256	261	anti-parallel
Strand 3	A	265	270	anti-parallel
Strand 4	A	353	361	anti-parallel
Strand 5	A	310	316	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	292	first strand
Strand 2	A	337	344	anti-parallel
Strand 3	A	297	300	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	292	first strand
Strand 2	A	337	344	anti-parallel
Strand 3	A	327	333	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	68	first strand
Strand 2	B	8	11	anti-parallel
Strand 3	B	17	21	anti-parallel
Strand 4	B	53	57	anti-parallel
Strand 5	B	42	48	anti-parallel
Strand 6	B	34	36	anti-parallel
Strand 7	B	71	73	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	155	first strand
Strand 2	B	165	169	parallel
Strand 3	B	182	188	anti-parallel
Strand 4	B	194	201	anti-parallel
Strand 5	B	208	214	anti-parallel
Strand 6	B	222	223	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	252	first strand
Strand 2	B	256	261	anti-parallel
Strand 3	B	265	270	anti-parallel
Strand 4	B	353	361	anti-parallel
Strand 5	B	310	316	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	292	first strand
Strand 2	B	337	344	anti-parallel
Strand 3	B	297	300	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	292	first strand
Strand 2	B	337	344	anti-parallel
Strand 3	B	327	333	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	8	11	anti-parallel
Strand 3	C	17	21	anti-parallel
Strand 4	C	53	57	anti-parallel
Strand 5	C	42	48	anti-parallel
Strand 6	C	34	36	anti-parallel
Strand 7	C	71	73	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	154	first strand
Strand 2	C	165	169	parallel
Strand 3	C	182	188	anti-parallel
Strand 4	C	194	201	anti-parallel
Strand 5	C	208	214	anti-parallel
Strand 6	C	222	223	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	252	first strand
Strand 2	C	256	261	anti-parallel
Strand 3	C	265	271	anti-parallel
Strand 4	C	352	361	anti-parallel
Strand 5	C	310	317	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	292	first strand
Strand 2	C	337	344	anti-parallel
Strand 3	C	297	300	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	292	first strand
Strand 2	C	337	344	anti-parallel
Strand 3	C	327	333	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	65	68	first strand
Strand 2	F	8	11	anti-parallel
Strand 3	F	17	21	anti-parallel
Strand 4	F	53	57	anti-parallel
Strand 5	F	42	48	anti-parallel
Strand 6	F	34	36	anti-parallel
Strand 7	F	71	73	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	154	first strand
Strand 2	F	165	169	parallel
Strand 3	F	182	188	anti-parallel
Strand 4	F	194	201	anti-parallel
Strand 5	F	208	214	anti-parallel
Strand 6	F	217	218	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	154	first strand
Strand 2	F	165	169	parallel
Strand 3	F	182	188	anti-parallel
Strand 4	F	194	201	anti-parallel
Strand 5	F	208	214	anti-parallel
Strand 6	F	222	223	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	247	252	first strand
Strand 2	F	256	261	anti-parallel
Strand 3	F	265	270	anti-parallel
Strand 4	F	353	361	anti-parallel
Strand 5	F	310	316	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	291	292	first strand
Strand 2	F	337	344	anti-parallel
Strand 3	F	297	300	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	291	292	first strand
Strand 2	F	337	344	anti-parallel
Strand 3	F	327	333	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	65	68	first strand
Strand 2	G	8	11	anti-parallel
Strand 3	G	17	21	anti-parallel
Strand 4	G	53	57	anti-parallel
Strand 5	G	42	48	anti-parallel
Strand 6	G	34	36	anti-parallel
Strand 7	G	71	73	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	153	155	first strand
Strand 2	G	165	169	parallel
Strand 3	G	182	188	anti-parallel
Strand 4	G	194	201	anti-parallel
Strand 5	G	208	214	anti-parallel
Strand 6	G	222	223	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	247	252	first strand
Strand 2	G	256	261	anti-parallel
Strand 3	G	265	271	anti-parallel
Strand 4	G	353	361	anti-parallel
Strand 5	G	310	316	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	291	292	first strand
Strand 2	G	337	344	anti-parallel
Strand 3	G	297	300	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	291	292	first strand
Strand 2	G	337	344	anti-parallel
Strand 3	G	327	333	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	65	68	first strand
Strand 2	H	8	11	anti-parallel
Strand 3	H	17	21	anti-parallel
Strand 4	H	53	57	anti-parallel
Strand 5	H	42	47	anti-parallel
Strand 6	H	34	36	anti-parallel
Strand 7	H	71	73	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	153	154	first strand
Strand 2	H	165	169	parallel
Strand 3	H	182	188	anti-parallel
Strand 4	H	195	201	anti-parallel
Strand 5	H	208	213	anti-parallel
Strand 6	H	222	223	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	247	252	first strand
Strand 2	H	256	261	anti-parallel
Strand 3	H	265	271	anti-parallel
Strand 4	H	352	361	anti-parallel
Strand 5	H	310	317	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	291	292	first strand
Strand 2	H	337	344	anti-parallel
Strand 3	H	297	300	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	291	292	first strand
Strand 2	H	337	344	anti-parallel
Strand 3	H	327	333	anti-parallel

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There are 7 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	65	68	first strand
Strand 2	J	8	11	anti-parallel
Strand 3	J	17	21	anti-parallel
Strand 4	J	53	57	anti-parallel
Strand 5	J	42	47	anti-parallel
Strand 6	J	34	36	anti-parallel
Strand 7	J	71	73	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	153	154	first strand
Strand 2	J	165	169	parallel
Strand 3	J	182	188	anti-parallel
Strand 4	J	194	201	anti-parallel
Strand 5	J	208	214	anti-parallel
Strand 6	J	217	218	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	153	154	first strand
Strand 2	J	165	169	parallel
Strand 3	J	182	188	anti-parallel
Strand 4	J	194	201	anti-parallel
Strand 5	J	208	214	anti-parallel
Strand 6	J	222	223	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	247	252	first strand
Strand 2	J	256	261	anti-parallel
Strand 3	J	265	270	anti-parallel
Strand 4	J	353	361	anti-parallel
Strand 5	J	310	316	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	291	292	first strand
Strand 2	J	337	344	anti-parallel
Strand 3	J	297	300	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	291	292	first strand
Strand 2	J	337	344	anti-parallel
Strand 3	J	327	333	anti-parallel

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There are 7 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	65	68	first strand
Strand 2	K	8	11	anti-parallel
Strand 3	K	17	21	anti-parallel
Strand 4	K	53	57	anti-parallel
Strand 5	K	42	48	anti-parallel
Strand 6	K	34	36	anti-parallel
Strand 7	K	71	73	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	153	155	first strand
Strand 2	K	165	169	parallel
Strand 3	K	182	188	anti-parallel
Strand 4	K	194	201	anti-parallel
Strand 5	K	208	214	anti-parallel
Strand 6	K	222	223	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	247	252	first strand
Strand 2	K	256	261	anti-parallel
Strand 3	K	265	271	anti-parallel
Strand 4	K	353	361	anti-parallel
Strand 5	K	310	316	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	291	292	first strand
Strand 2	K	337	344	anti-parallel
Strand 3	K	297	300	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	291	292	first strand
Strand 2	K	337	344	anti-parallel
Strand 3	K	327	333	anti-parallel

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There are 7 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	65	68	first strand
Strand 2	L	8	11	anti-parallel
Strand 3	L	17	21	anti-parallel
Strand 4	L	53	57	anti-parallel
Strand 5	L	42	48	anti-parallel
Strand 6	L	34	36	anti-parallel
Strand 7	L	71	73	anti-parallel

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There are 6 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	155	first strand
Strand 2	L	165	169	parallel
Strand 3	L	182	188	anti-parallel
Strand 4	L	195	201	anti-parallel
Strand 5	L	208	214	anti-parallel
Strand 6	L	217	218	anti-parallel

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There are 6 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	155	first strand
Strand 2	L	165	169	parallel
Strand 3	L	182	188	anti-parallel
Strand 4	L	195	201	anti-parallel
Strand 5	L	208	214	anti-parallel
Strand 6	L	222	223	anti-parallel

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There are 5 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	247	252	first strand
Strand 2	L	256	261	anti-parallel
Strand 3	L	265	271	anti-parallel
Strand 4	L	352	361	anti-parallel
Strand 5	L	310	317	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	291	292	first strand
Strand 2	L	337	344	anti-parallel
Strand 3	L	297	300	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	291	292	first strand
Strand 2	L	337	344	anti-parallel
Strand 3	L	327	333	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 25VJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
25VJ