Analysis of interatomic Contacts of Structural Units in PDB entry:
25VK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 25VK entry

There is 1 chain in PDB entry 25VK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2SER 811
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 25VK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 8Right-handed alpha
Helix 2
AA2
A
9 35Right-handed alpha
Helix 3
AA3
A
35 43Right-handed alpha
Helix 4
AA4
A
46 65Right-handed alpha
Helix 5
AA5
A
66 73Right-handed 310
Helix 6
AA6
A
74 98Right-handed alpha
Helix 7
AA7
A
200 224Right-handed alpha
Helix 8
AA8
A
227 240Right-handed alpha
Helix 9
AA9
A
277 286Right-handed alpha
Helix 10
AB1
A
299 311Right-handed alpha
Helix 11
AB2
A
320 331Right-handed alpha
Helix 12
AB3
A
331 337Right-handed alpha
Helix 13
AB4
A
345 352Right-handed alpha
Helix 14
AB5
A
360 365Right-handed 310
Helix 15
AB6
A
373 383Right-handed alpha
Helix 16
AB7
A
384 388Right-handed 310
Helix 17
AB8
A
389 410Right-handed alpha
Helix 18
AB9
A
439 463Right-handed alpha
Helix 19
AC1
A
465 483Right-handed alpha
Helix 20
AC2
A
489 503Right-handed alpha
Helix 21
AC3
A
503 529Right-handed alpha
Helix 22
AC4
A
533 564Right-handed alpha
Helix 23
AC5
A
566 569Right-handed 310
Helix 24
AC6
A
570 589Right-handed alpha
Helix 25
AC7
A
594 617Right-handed alpha
Helix 26
AC8
A
629 662Right-handed alpha
Helix 27
AC9
A
667 708Right-handed alpha
Helix 28
AD1
A
715 733Right-handed alpha
Helix 29
AD2
A
744 770Right-handed alpha
Helix 30
AD3
A
784 810Right-handed alpha
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There are 3 sheets in PDB entry 25VK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 168first strand
Strand 2
A
147 158anti-parallel
Strand 3
A
125 140anti-parallel
Strand 4
A
110 116anti-parallel
Strand 5
A
100 106anti-parallel
Strand 6
A
192 198anti-parallel
Strand 7
A
179 186anti-parallel
Strand 8
A
173 176anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 290first strand
Strand 2
A
296 298anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 342first strand
Strand 2
A
358 359anti-parallel
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