Analysis of interatomic Contacts of Structural Units in PDB entry:
25YV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 25YV entry

There are 2 chains in PDB entry 25YV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 356
B
 MET 1PRO 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 25YV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 39Right-handed alpha
Helix 2
AA2
A
39 46Right-handed alpha
Helix 3
AA3
A
47 49Right-handed 310
Helix 4
AA4
A
54 61Right-handed alpha
Helix 5
AA5
A
67 81Right-handed alpha
Helix 6
AA6
A
105 110Right-handed alpha
Helix 7
AA7
A
119 124Right-handed alpha
Helix 8
AA8
A
125 127Right-handed 310
Helix 9
AA9
A
130 135Right-handed 310
Helix 10
AB1
A
136 141Right-handed 310
Helix 11
AB2
A
145 152Right-handed alpha
Helix 12
AB3
A
154 161Right-handed alpha
Helix 13
AB4
A
162 188Right-handed alpha
Helix 14
AB5
A
188 195Right-handed alpha
Helix 15
AB6
A
206 216Right-handed alpha
Helix 16
AB7
A
226 232Right-handed alpha
Helix 17
AB8
A
261 265Right-handed 310
Helix 18
AB9
A
266 281Right-handed alpha
Helix 19
AC1
A
303 317Right-handed alpha
Helix 20
AC2
A
324 335Right-handed alpha
Helix 21
AC3
B
10 38Right-handed alpha
Helix 22
AC4
B
39 46Right-handed alpha
Helix 23
AC5
B
47 49Right-handed 310
Helix 24
AC6
B
54 61Right-handed alpha
Helix 25
AC7
B
67 81Right-handed alpha
Helix 26
AC8
B
105 110Right-handed alpha
Helix 27
AC9
B
119 124Right-handed alpha
Helix 28
AD1
B
125 127Right-handed 310
Helix 29
AD2
B
130 141Right-handed 310
Helix 30
AD3
B
145 152Right-handed alpha
Helix 31
AD4
B
154 161Right-handed alpha
Helix 32
AD5
B
162 193Right-handed alpha
Helix 33
AD6
B
206 216Right-handed alpha
Helix 34
AD7
B
226 231Right-handed alpha
Helix 35
AD8
B
261 265Right-handed 310
Helix 36
AD9
B
266 281Right-handed alpha
Helix 37
AE1
B
303 317Right-handed alpha
Helix 38
AE2
B
325 335Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 25YV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
B
339 343parallel
Strand 3
B
350 355anti-parallel
Strand 4
B
287 292anti-parallel
Strand 5
B
255 259parallel
Strand 6
B
197 201parallel
Strand 7
B
220 225parallel
Strand 8
B
239 243parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
101 103anti-parallel
Strand 3
A
85 87anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 243first strand
Strand 2
A
220 225parallel
Strand 3
A
197 201parallel
Strand 4
A
255 259parallel
Strand 5
A
287 292parallel
Strand 6
A
350 355anti-parallel
Strand 7
A
339 343anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 53first strand
Strand 2
B
101 104anti-parallel
Strand 3
B
84 87anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
294 295first strand
Strand 2
B
323 324parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il