Analysis of interatomic Contacts of Structural Units in PDB entry:
27JP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 27JP entry

There are 8 chains in PDB entry 27JP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 193	GLY 316
B	GLY 193	GLY 316
C	GLY 193	GLY 316
D	SER 190	LEU 319
E	SER 190	LEU 319
F	SER 190	LEU 319
G	SER 190	LEU 319
H	GLY 193	GLY 316

There are 24 helices in PDB entry 27JP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	221	230	Right-handed alpha
Helix 2	AA2	A	232	234	Right-handed 310
Helix 3	AA3	A	285	292	Right-handed alpha
Helix 4	AA4	B	221	230	Right-handed alpha
Helix 5	AA5	B	232	234	Right-handed 310
Helix 6	AA6	B	285	292	Right-handed alpha
Helix 7	AA7	C	221	230	Right-handed alpha
Helix 8	AA8	C	232	234	Right-handed 310
Helix 9	AA9	C	285	292	Right-handed alpha
Helix 10	AB1	D	221	230	Right-handed alpha
Helix 11	AB2	D	232	234	Right-handed 310
Helix 12	AB3	D	285	292	Right-handed alpha
Helix 13	AB4	E	221	230	Right-handed alpha
Helix 14	AB5	E	232	236	Right-handed 310
Helix 15	AB6	E	285	292	Right-handed alpha
Helix 16	AB7	F	221	230	Right-handed alpha
Helix 17	AB8	F	232	234	Right-handed 310
Helix 18	AB9	F	285	292	Right-handed alpha
Helix 19	AC1	G	221	230	Right-handed alpha
Helix 20	AC2	G	232	234	Right-handed 310
Helix 21	AC3	G	285	292	Right-handed alpha
Helix 22	AC4	H	221	230	Right-handed alpha
Helix 23	AC5	H	232	234	Right-handed 310
Helix 24	AC6	H	285	292	Right-handed alpha

There are 19 sheets in PDB entry 27JP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	237	first strand
Strand 2	A	253	263	anti-parallel
Strand 3	A	195	202	anti-parallel
Strand 4	A	313	315	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	237	first strand
Strand 2	A	253	263	anti-parallel
Strand 3	A	266	275	anti-parallel
Strand 4	A	219	220	parallel
Strand 5	A	282	284	anti-parallel
Strand 6	A	205	211	parallel
Strand 7	A	195	202	anti-parallel
Strand 8	A	313	315	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	311	first strand
Strand 2	A	302	305	anti-parallel
Strand 3	A	295	297	anti-parallel
Strand 4	G	295	297	anti-parallel
Strand 5	G	302	305	anti-parallel
Strand 6	G	308	311	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	237	first strand
Strand 2	B	253	263	anti-parallel
Strand 3	B	195	202	anti-parallel
Strand 4	B	313	315	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	237	first strand
Strand 2	B	253	263	anti-parallel
Strand 3	B	266	275	anti-parallel
Strand 4	B	218	220	parallel
Strand 5	B	282	284	anti-parallel
Strand 6	B	205	211	parallel
Strand 7	B	195	202	anti-parallel
Strand 8	B	313	315	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	311	first strand
Strand 2	B	302	305	anti-parallel
Strand 3	B	295	297	anti-parallel
Strand 4	E	295	297	anti-parallel
Strand 5	E	302	305	anti-parallel
Strand 6	E	308	311	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	237	first strand
Strand 2	C	253	263	anti-parallel
Strand 3	C	195	202	anti-parallel
Strand 4	C	313	315	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	237	first strand
Strand 2	C	253	263	anti-parallel
Strand 3	C	266	275	anti-parallel
Strand 4	C	218	220	parallel
Strand 5	C	282	284	anti-parallel
Strand 6	C	205	211	parallel
Strand 7	C	195	202	anti-parallel
Strand 8	C	313	315	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	311	first strand
Strand 2	C	302	305	anti-parallel
Strand 3	C	295	297	anti-parallel
Strand 4	D	295	297	anti-parallel
Strand 5	D	302	305	anti-parallel
Strand 6	D	308	311	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	237	first strand
Strand 2	D	255	263	anti-parallel
Strand 3	D	196	202	anti-parallel
Strand 4	D	313	314	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	237	first strand
Strand 2	D	255	263	anti-parallel
Strand 3	D	266	274	anti-parallel
Strand 4	D	219	220	parallel
Strand 5	D	282	284	anti-parallel
Strand 6	D	205	211	parallel
Strand 7	D	196	202	anti-parallel
Strand 8	D	313	314	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	313	314	first strand
Strand 2	E	196	202	anti-parallel
Strand 3	E	255	263	anti-parallel
Strand 4	E	266	274	anti-parallel
Strand 5	E	218	220	parallel
Strand 6	E	282	284	anti-parallel
Strand 7	E	205	211	parallel
Strand 8	E	196	202	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	236	237	first strand
Strand 2	F	255	263	anti-parallel
Strand 3	F	196	202	anti-parallel
Strand 4	F	313	314	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	236	237	first strand
Strand 2	F	255	263	anti-parallel
Strand 3	F	266	274	anti-parallel
Strand 4	F	219	220	parallel
Strand 5	F	282	284	anti-parallel
Strand 6	F	205	211	parallel
Strand 7	F	196	202	anti-parallel
Strand 8	F	313	314	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	308	311	first strand
Strand 2	F	302	305	anti-parallel
Strand 3	F	295	297	anti-parallel
Strand 4	H	295	297	anti-parallel
Strand 5	H	302	305	anti-parallel
Strand 6	H	308	311	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	236	237	first strand
Strand 2	G	255	263	anti-parallel
Strand 3	G	196	202	anti-parallel
Strand 4	G	313	314	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	236	237	first strand
Strand 2	G	255	263	anti-parallel
Strand 3	G	266	274	anti-parallel
Strand 4	G	218	220	parallel
Strand 5	G	282	284	anti-parallel
Strand 6	G	205	211	parallel
Strand 7	G	196	202	anti-parallel
Strand 8	G	313	314	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	236	237	first strand
Strand 2	H	255	263	anti-parallel
Strand 3	H	195	202	anti-parallel
Strand 4	H	313	315	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	236	237	first strand
Strand 2	H	255	263	anti-parallel
Strand 3	H	266	274	anti-parallel
Strand 4	H	218	220	parallel
Strand 5	H	282	284	anti-parallel
Strand 6	H	205	211	parallel
Strand 7	H	195	202	anti-parallel
Strand 8	H	313	315	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 27JP

Analysis of interatomic Contacts of Structural Units in PDB entry:
27JP