Analysis of interatomic Contacts of Structural Units in PDB entry:
27XJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 27XJ entry

There is 1 chain in PDB entry 27XJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 33ARG 440
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 27XJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 49Right-handed alpha
Helix 2
AA2
A
73 91Right-handed alpha
Helix 3
AA3
A
92 111Right-handed alpha
Helix 4
AA4
A
120 124Right-handed 310
Helix 5
AA5
A
144 163Right-handed alpha
Helix 6
AA6
A
165 173Right-handed alpha
Helix 7
AA7
A
184 197Right-handed alpha
Helix 8
AA8
A
212 233Right-handed alpha
Helix 9
AA9
A
235 255Right-handed alpha
Helix 10
AB1
A
276 281Right-handed 310
Helix 11
AB2
A
282 291Right-handed alpha
Helix 12
AB3
A
302 320Right-handed alpha
Helix 13
AB4
A
321 324Right-handed 310
Helix 14
AB5
A
352 370Right-handed alpha
Helix 15
AB6
A
376 398Right-handed alpha
Helix 16
AB7
A
420 440Right-handed alpha
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There are 4 sheets in PDB entry 27XJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
126 127anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
209 210anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 258first strand
Strand 2
A
263 264anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 407first strand
Strand 2
A
414 415anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il