Analysis of interatomic Contacts of Structural Units in PDB entry:
28JC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 28JC entry

There are 14 chains in PDB entry 28JC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	GLU 14	TYR 142
E	ASP 2	GLN 210
F	GLN 49	ASP 127
G	MET 1	VAL 171
H	ALA 2	ALA 149
I	VAL 12	GLU 125
J	MET 1	LEU 65
K	MET 1	GLY 115
L	MET 15	ARG 58
M	ARG 19	GLU 334
A	ASP 360	PRO 1487
B	ASP 15	SER 1061
C	PRO 2	VAL 271
N	GLU 45	PRO 197

There are130 helices in PDB entry 28JC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	24	29	Right-handed alpha
Helix 2	AA2	D	33	51	Right-handed alpha
Helix 3	AA3	D	58	71	Right-handed alpha
Helix 4	AA4	D	76	89	Right-handed alpha
Helix 5	AA5	D	93	104	Right-handed alpha
Helix 6	AA6	D	107	115	Right-handed alpha
Helix 7	AA7	D	117	121	Right-handed 310
Helix 8	AA8	D	123	138	Right-handed alpha
Helix 9	AA9	E	3	24	Right-handed alpha
Helix 10	AB1	E	29	34	Right-handed alpha
Helix 11	AB2	E	36	44	Right-handed alpha
Helix 12	AB3	E	55	59	Right-handed 310
Helix 13	AB4	E	83	98	Right-handed alpha
Helix 14	AB5	E	111	121	Right-handed alpha
Helix 15	AB6	E	131	136	Right-handed alpha
Helix 16	AB7	E	152	164	Right-handed alpha
Helix 17	AB8	E	177	184	Right-handed alpha
Helix 18	AB9	F	58	75	Right-handed alpha
Helix 19	AC1	F	88	100	Right-handed alpha
Helix 20	AC2	G	14	18	Right-handed 310
Helix 21	AC3	G	21	35	Right-handed alpha
Helix 22	AC4	H	83	88	Right-handed 310
Helix 23	AC5	H	128	132	Right-handed 310
Helix 24	AC6	I	63	68	Right-handed alpha
Helix 25	AC7	I	69	73	Right-handed 310
Helix 26	AC8	J	16	27	Right-handed alpha
Helix 27	AC9	J	30	39	Right-handed alpha
Helix 28	AD1	J	42	51	Right-handed alpha
Helix 29	AD2	J	55	60	Right-handed alpha
Helix 30	AD3	K	5	10	Right-handed 310
Helix 31	AD4	K	39	53	Right-handed alpha
Helix 32	AD5	K	82	115	Right-handed alpha
Helix 33	AD6	M	21	37	Right-handed alpha
Helix 34	AD7	M	37	42	Right-handed alpha
Helix 35	AD8	M	48	73	Right-handed alpha
Helix 36	AD9	M	229	241	Right-handed alpha
Helix 37	AE1	M	305	316	Right-handed alpha
Helix 38	AE2	M	316	334	Right-handed alpha
Helix 39	AE3	A	381	388	Right-handed alpha
Helix 40	AE4	A	398	409	Right-handed alpha
Helix 41	AE5	A	434	439	Right-handed alpha
Helix 42	AE6	A	508	519	Right-handed alpha
Helix 43	AE7	A	541	549	Right-handed alpha
Helix 44	AE8	A	556	566	Right-handed alpha
Helix 45	AE9	A	588	596	Right-handed alpha
Helix 46	AF1	A	610	615	Right-handed 310
Helix 47	AF2	A	641	646	Right-handed alpha
Helix 48	AF3	A	651	660	Right-handed alpha
Helix 49	AF4	A	661	684	Right-handed alpha
Helix 50	AF5	A	688	693	Right-handed alpha
Helix 51	AF6	A	695	722	Right-handed alpha
Helix 52	AF7	A	732	760	Right-handed alpha
Helix 53	AF8	A	764	773	Right-handed alpha
Helix 54	AF9	A	777	786	Right-handed alpha
Helix 55	AG1	A	816	821	Right-handed alpha
Helix 56	AG2	A	832	868	Right-handed alpha
Helix 57	AG3	A	890	894	Right-handed 310
Helix 58	AG4	A	912	920	Right-handed alpha
Helix 59	AG5	A	926	934	Right-handed alpha
Helix 60	AG6	A	935	944	Right-handed alpha
Helix 61	AG7	A	945	970	Right-handed alpha
Helix 62	AG8	A	982	994	Right-handed alpha
Helix 63	AG9	A	1005	1020	Right-handed alpha
Helix 64	AH1	A	1027	1038	Right-handed alpha
Helix 65	AH2	A	1038	1049	Right-handed alpha
Helix 66	AH3	A	1050	1057	Right-handed alpha
Helix 67	AH4	A	1061	1080	Right-handed alpha
Helix 68	AH5	A	1086	1097	Right-handed alpha
Helix 69	AH6	A	1120	1129	Right-handed alpha
Helix 70	AH7	A	1144	1149	Right-handed 310
Helix 71	AH8	A	1150	1162	Right-handed alpha
Helix 72	AH9	A	1166	1169	Right-handed alpha
Helix 73	AI1	A	1190	1197	Right-handed alpha
Helix 74	AI2	A	1217	1225	Right-handed alpha
Helix 75	AI3	A	1227	1239	Right-handed alpha
Helix 76	AI4	A	1280	1296	Right-handed alpha
Helix 77	AI5	A	1342	1347	Right-handed alpha
Helix 78	AI6	A	1361	1369	Right-handed alpha
Helix 79	AI7	A	1370	1388	Right-handed alpha
Helix 80	AI8	A	1394	1407	Right-handed alpha
Helix 81	AI9	A	1476	1481	Right-handed alpha
Helix 82	AJ1	B	18	37	Right-handed alpha
Helix 83	AJ2	B	40	53	Right-handed alpha
Helix 84	AJ3	B	53	61	Right-handed alpha
Helix 85	AJ4	B	109	117	Right-handed alpha
Helix 86	AJ5	B	167	174	Right-handed alpha
Helix 87	AJ6	B	269	277	Right-handed alpha
Helix 88	AJ7	B	280	289	Right-handed alpha
Helix 89	AJ8	B	296	302	Right-handed alpha
Helix 90	AJ9	B	303	308	Right-handed 310
Helix 91	AK1	B	313	323	Right-handed alpha
Helix 92	AK2	B	331	346	Right-handed alpha
Helix 93	AK3	B	357	378	Right-handed alpha
Helix 94	AK4	B	395	424	Right-handed alpha
Helix 95	AK5	B	430	435	Right-handed alpha
Helix 96	AK6	B	436	451	Right-handed alpha
Helix 97	AK7	B	474	483	Right-handed alpha
Helix 98	AK8	B	491	496	Right-handed alpha
Helix 99	AK9	B	502	506	Right-handed 310
Helix 100	AL1	B	538	549	Right-handed alpha
Helix 101	AL2	B	552	556	Right-handed 310
Helix 102	AL3	B	557	562	Right-handed 310
Helix 103	AL4	B	579	593	Right-handed alpha
Helix 104	AL5	B	636	645	Right-handed alpha
Helix 105	AL6	B	646	649	Right-handed 310
Helix 106	AL7	B	652	659	Right-handed alpha
Helix 107	AL8	B	668	673	Right-handed 310
Helix 108	AL9	B	678	684	Right-handed alpha
Helix 109	AM1	B	699	704	Right-handed 310
Helix 110	AM2	B	718	732	Right-handed alpha
Helix 111	AM3	B	798	803	Right-handed alpha
Helix 112	AM4	B	969	972	Right-handed 310
Helix 113	AM5	B	977	994	Right-handed alpha
Helix 114	AM6	B	1007	1016	Right-handed alpha
Helix 115	AM7	B	1017	1019	Right-handed 310
Helix 116	AM8	B	1055	1061	Right-handed alpha
Helix 117	AM9	C	27	40	Right-handed alpha
Helix 118	AN1	C	60	71	Right-handed alpha
Helix 119	AN2	C	77	82	Right-handed alpha
Helix 120	AN3	C	118	120	Right-handed 310
Helix 121	AN4	C	129	133	Right-handed 310
Helix 122	AN5	C	173	177	Right-handed 310
Helix 123	AN6	C	199	203	Right-handed 310
Helix 124	AN7	C	240	271	Right-handed alpha
Helix 125	AN8	N	47	65	Right-handed alpha
Helix 126	AN9	N	71	79	Right-handed alpha
Helix 127	AO1	N	83	97	Right-handed alpha
Helix 128	AO2	N	131	135	Right-handed 310
Helix 129	AO3	N	137	151	Right-handed alpha
Helix 130	AO4	N	190	194	Right-handed 310

There are 41 sheets in PDB entry 28JC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	26	27	first strand
Strand 2	E	60	64	anti-parallel
Strand 3	E	71	75	anti-parallel
Strand 4	E	101	105	parallel
Strand 5	E	126	130	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	150	first strand
Strand 2	E	190	196	anti-parallel
Strand 3	E	202	210	anti-parallel
Strand 4	E	172	174	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	115	118	first strand
Strand 2	F	104	109	anti-parallel
Strand 3	A	1471	1475	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	13	first strand
Strand 2	G	66	77	anti-parallel
Strand 3	G	43	53	anti-parallel
Strand 4	G	38	39	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	13	first strand
Strand 2	G	66	77	anti-parallel
Strand 3	G	58	59	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	142	146	first strand
Strand 2	G	84	92	anti-parallel
Strand 3	G	97	100	anti-parallel
Strand 4	G	106	107	anti-parallel
Strand 5	G	156	160	parallel
Strand 6	G	150	153	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	117	119	first strand
Strand 2	G	128	130	anti-parallel
Strand 3	G	136	137	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	15	first strand
Strand 2	H	25	31	anti-parallel
Strand 3	H	38	44	anti-parallel
Strand 4	H	121	125	anti-parallel
Strand 5	H	114	118	anti-parallel
Strand 6	H	90	98	anti-parallel
Strand 7	H	140	147	anti-parallel
Strand 8	H	55	61	anti-parallel
Strand 9	H	4	15	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	25	28	first strand
Strand 2	I	35	38	anti-parallel
Strand 3	I	45	47	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	52	57	first strand
Strand 2	A	1170	1176	anti-parallel
Strand 3	A	1214	1216	anti-parallel
Strand 4	A	1255	1261	anti-parallel
Strand 5	A	1243	1247	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	80	81	first strand
Strand 2	I	94	98	anti-parallel
Strand 3	I	110	114	anti-parallel
Strand 4	I	122	124	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	19	23	first strand
Strand 2	K	30	36	anti-parallel
Strand 3	K	70	77	anti-parallel
Strand 4	K	56	62	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	25	26	first strand
Strand 2	L	17	19	anti-parallel
Strand 3	L	44	46	anti-parallel
Strand 4	B	902	911	anti-parallel
Strand 5	B	917	927	anti-parallel
Strand 6	B	814	817	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	748	751	first strand
Strand 2	B	808	811	anti-parallel
Strand 3	B	917	927	anti-parallel
Strand 4	B	902	911	anti-parallel
Strand 5	B	859	860	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	54	56	first strand
Strand 2	C	44	55	anti-parallel
Strand 3	C	158	168	anti-parallel
Strand 4	C	99	106	anti-parallel
Strand 5	C	121	122	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	458	first strand
Strand 2	A	470	476	anti-parallel
Strand 3	A	377	380	parallel
Strand 4	A	482	484	anti-parallel
Strand 5	A	365	369	parallel
Strand 6	A	500	501	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	393	first strand
Strand 2	A	445	449	anti-parallel
Strand 3	A	416	420	anti-parallel
Strand 4	A	426	428	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	554	555	first strand
Strand 2	A	586	587	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	602	605	first strand
Strand 2	A	627	631	anti-parallel
Strand 3	A	634	637	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	789	790	first strand
Strand 2	A	822	823	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	872	873	first strand
Strand 2	A	879	880	anti-parallel
Strand 3	A	886	888	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	902	905	first strand
Strand 2	A	976	979	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1164	1165	first strand
Strand 2	A	1297	1299	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1304	1307	first strand
Strand 2	A	1338	1340	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1319	1322	first strand
Strand 2	A	1328	1331	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	67	first strand
Strand 2	B	83	88	anti-parallel
Strand 3	B	121	133	anti-parallel
Strand 4	B	92	93	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	67	first strand
Strand 2	B	83	88	anti-parallel
Strand 3	B	121	133	anti-parallel
Strand 4	B	141	153	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	99	first strand
Strand 2	B	105	107	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	187	first strand
Strand 2	B	190	193	anti-parallel
Strand 3	B	468	469	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	394	first strand
Strand 2	B	196	200	anti-parallel
Strand 3	B	484	486	parallel
Strand 4	B	523	525	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	209	first strand
Strand 2	B	215	223	anti-parallel
Strand 3	B	233	240	anti-parallel
Strand 4	B	256	258	anti-parallel
Strand 5	B	267	268	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	531	532	first strand
Strand 2	B	621	627	anti-parallel
Strand 3	B	662	666	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	531	532	first strand
Strand 2	B	621	627	anti-parallel
Strand 3	B	695	696	anti-parallel
Strand 4	B	675	676	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	565	569	first strand
Strand 2	B	572	577	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	604	606	first strand
Strand 2	B	611	613	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	759	760	first strand
Strand 2	B	997	998	parallel

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There are 8 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1025	1026	first strand
Strand 2	B	1041	1050	anti-parallel
Strand 3	B	934	936	anti-parallel
Strand 4	B	943	949	anti-parallel
Strand 5	B	793	797	parallel
Strand 6	B	965	967	anti-parallel
Strand 7	B	776	782	parallel
Strand 8	B	1041	1050	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	826	829	first strand
Strand 2	B	869	872	anti-parallel
Strand 3	B	890	891	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	14	first strand
Strand 2	C	18	24	anti-parallel
Strand 3	C	229	235	anti-parallel
Strand 4	C	179	185	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	116	first strand
Strand 2	C	149	153	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	117	120	first strand
Strand 2	N	125	128	anti-parallel
Strand 3	N	180	181	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 28JC

Analysis of interatomic Contacts of Structural Units in PDB entry:
28JC