Analysis of interatomic Contacts of Structural Units in PDB entry:
28JM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 28JM entry

There are 9 chains in PDB entry 28JM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 36	PHE 780
B	MET 1	LEU 760
C	ASN 115	THR 548
D	LEU 9	GLN 458
E	GLY 14	HIS 387
F	LEU 8	SER 292
G	VAL 2	SER 67
H	MET 1	MET 210
I	PRO 162	ILE 167

There are132 helices in PDB entry 28JM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	42	Right-handed 310
Helix 2	AA2	A	70	74	Right-handed 310
Helix 3	AA3	A	92	104	Right-handed alpha
Helix 4	AA4	A	119	129	Right-handed alpha
Helix 5	AA5	A	132	144	Right-handed alpha
Helix 6	AA6	A	149	159	Right-handed alpha
Helix 7	AA7	A	181	190	Right-handed alpha
Helix 8	AA8	A	191	197	Right-handed alpha
Helix 9	AA9	A	250	264	Right-handed alpha
Helix 10	AB1	A	273	275	Right-handed 310
Helix 11	AB2	A	276	287	Right-handed alpha
Helix 12	AB3	A	296	300	Right-handed 310
Helix 13	AB4	A	317	328	Right-handed alpha
Helix 14	AB5	A	345	358	Right-handed alpha
Helix 15	AB6	A	367	382	Right-handed alpha
Helix 16	AB7	A	385	387	Right-handed 310
Helix 17	AB8	A	421	433	Right-handed alpha
Helix 18	AB9	A	447	458	Right-handed alpha
Helix 19	AC1	A	479	484	Right-handed 310
Helix 20	AC2	A	492	500	Right-handed alpha
Helix 21	AC3	A	515	522	Right-handed alpha
Helix 22	AC4	A	528	536	Right-handed alpha
Helix 23	AC5	A	537	553	Right-handed alpha
Helix 24	AC6	A	564	575	Right-handed alpha
Helix 25	AC7	A	585	598	Right-handed alpha
Helix 26	AC8	A	632	644	Right-handed alpha
Helix 27	AC9	A	668	683	Right-handed alpha
Helix 28	AD1	A	705	718	Right-handed alpha
Helix 29	AD2	A	774	780	Right-handed alpha
Helix 30	AD3	B	18	35	Right-handed alpha
Helix 31	AD4	B	47	63	Right-handed alpha
Helix 32	AD5	B	76	99	Right-handed alpha
Helix 33	AD6	B	126	138	Right-handed alpha
Helix 34	AD7	B	139	147	Right-handed alpha
Helix 35	AD8	B	155	165	Right-handed alpha
Helix 36	AD9	B	178	188	Right-handed alpha
Helix 37	AE1	B	190	199	Right-handed alpha
Helix 38	AE2	B	210	212	Right-handed 310
Helix 39	AE3	B	223	227	Right-handed 310
Helix 40	AE4	B	238	247	Right-handed alpha
Helix 41	AE5	B	252	276	Right-handed alpha
Helix 42	AE6	B	278	290	Right-handed alpha
Helix 43	AE7	B	310	314	Right-handed 310
Helix 44	AE8	B	320	324	Right-handed 310
Helix 45	AE9	B	325	344	Right-handed alpha
Helix 46	AF1	B	353	366	Right-handed alpha
Helix 47	AF2	B	369	387	Right-handed alpha
Helix 48	AF3	B	394	408	Right-handed alpha
Helix 49	AF4	B	444	450	Right-handed alpha
Helix 50	AF5	B	465	471	Right-handed alpha
Helix 51	AF6	B	513	531	Right-handed alpha
Helix 52	AF7	B	541	555	Right-handed alpha
Helix 53	AF8	B	556	565	Right-handed alpha
Helix 54	AF9	B	575	590	Right-handed alpha
Helix 55	AG1	B	629	643	Right-handed alpha
Helix 56	AG2	B	647	664	Right-handed alpha
Helix 57	AG3	B	681	685	Right-handed 310
Helix 58	AG4	B	686	691	Right-handed alpha
Helix 59	AG5	B	694	699	Right-handed alpha
Helix 60	AG6	B	710	725	Right-handed alpha
Helix 61	AG7	B	729	733	Right-handed 310
Helix 62	AG8	B	740	745	Right-handed alpha
Helix 63	AG9	B	746	757	Right-handed alpha
Helix 64	AH1	C	116	121	Right-handed alpha
Helix 65	AH2	C	121	132	Right-handed alpha
Helix 66	AH3	C	138	146	Right-handed alpha
Helix 67	AH4	C	189	200	Right-handed alpha
Helix 68	AH5	C	200	210	Right-handed alpha
Helix 69	AH6	C	216	225	Right-handed alpha
Helix 70	AH7	C	243	261	Right-handed alpha
Helix 71	AH8	C	264	268	Right-handed 310
Helix 72	AH9	C	294	319	Right-handed alpha
Helix 73	AI1	C	347	358	Right-handed alpha
Helix 74	AI2	C	379	385	Right-handed alpha
Helix 75	AI3	C	396	413	Right-handed alpha
Helix 76	AI4	C	423	435	Right-handed alpha
Helix 77	AI5	C	454	478	Right-handed alpha
Helix 78	AI6	C	483	504	Right-handed alpha
Helix 79	AI7	C	504	516	Right-handed alpha
Helix 80	AI8	C	522	548	Right-handed alpha
Helix 81	AI9	D	18	25	Right-handed alpha
Helix 82	AJ1	D	27	35	Right-handed alpha
Helix 83	AJ2	D	37	48	Right-handed alpha
Helix 84	AJ3	D	49	59	Right-handed alpha
Helix 85	AJ4	D	68	73	Right-handed alpha
Helix 86	AJ5	D	80	93	Right-handed alpha
Helix 87	AJ6	D	111	123	Right-handed alpha
Helix 88	AJ7	D	144	164	Right-handed alpha
Helix 89	AJ8	D	172	182	Right-handed alpha
Helix 90	AJ9	D	199	206	Right-handed alpha
Helix 91	AK1	D	207	222	Right-handed alpha
Helix 92	AK2	D	229	241	Right-handed alpha
Helix 93	AK3	D	255	269	Right-handed alpha
Helix 94	AK4	D	284	289	Right-handed alpha
Helix 95	AK5	D	321	330	Right-handed alpha
Helix 96	AK6	D	347	357	Right-handed alpha
Helix 97	AK7	D	360	371	Right-handed alpha
Helix 98	AK8	D	373	379	Right-handed 310
Helix 99	AK9	D	384	399	Right-handed alpha
Helix 100	AL1	D	414	429	Right-handed alpha
Helix 101	AL2	D	446	458	Right-handed alpha
Helix 102	AL3	E	17	22	Right-handed 310
Helix 103	AL4	E	30	43	Right-handed alpha
Helix 104	AL5	E	68	73	Right-handed 310
Helix 105	AL6	E	79	99	Right-handed alpha
Helix 106	AL7	E	123	134	Right-handed alpha
Helix 107	AL8	E	144	157	Right-handed alpha
Helix 108	AL9	E	181	193	Right-handed alpha
Helix 109	AM1	E	205	216	Right-handed alpha
Helix 110	AM2	E	224	237	Right-handed alpha
Helix 111	AM3	E	272	277	Right-handed alpha
Helix 112	AM4	E	314	320	Right-handed alpha
Helix 113	AM5	E	321	325	Right-handed 310
Helix 114	AM6	E	368	378	Right-handed alpha
Helix 115	AM7	E	382	387	Right-handed alpha
Helix 116	AM8	F	18	28	Right-handed alpha
Helix 117	AM9	F	33	52	Right-handed alpha
Helix 118	AN1	F	101	121	Right-handed alpha
Helix 119	AN2	F	132	151	Right-handed alpha
Helix 120	AN3	F	174	187	Right-handed alpha
Helix 121	AN4	F	200	211	Right-handed alpha
Helix 122	AN5	F	222	230	Right-handed alpha
Helix 123	AN6	F	234	241	Right-handed alpha
Helix 124	AN7	G	13	27	Right-handed alpha
Helix 125	AN8	G	49	64	Right-handed alpha
Helix 126	AN9	H	11	16	Right-handed alpha
Helix 127	AO1	H	31	40	Right-handed alpha
Helix 128	AO2	H	65	82	Right-handed alpha
Helix 129	AO3	H	91	111	Right-handed alpha
Helix 130	AO4	H	114	129	Right-handed alpha
Helix 131	AO5	H	130	190	Right-handed alpha
Helix 132	AO6	H	193	210	Right-handed alpha

There are 24 sheets in PDB entry 28JM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	59	60	anti-parallel
Strand 3	D	333	337	parallel
Strand 4	D	342	345	anti-parallel
Strand 5	D	315	317	anti-parallel
Strand 6	D	307	309	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	87	first strand
Strand 2	A	113	117	anti-parallel
Strand 3	A	105	108	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	167	first strand
Strand 2	A	291	292	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	171	first strand
Strand 2	A	174	176	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	295	first strand
Strand 2	A	333	334	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	391	first strand
Strand 2	A	405	409	parallel
Strand 3	A	361	365	parallel
Strand 4	A	437	440	parallel
Strand 5	A	463	467	parallel
Strand 6	A	336	339	parallel
Strand 7	A	487	490	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	604	607	first strand
Strand 2	A	558	561	parallel
Strand 3	A	622	625	parallel
Strand 4	A	657	663	parallel
Strand 5	A	505	511	parallel
Strand 6	A	689	690	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	B	8	11	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	174	first strand
Strand 2	B	105	108	parallel
Strand 3	B	204	208	parallel
Strand 4	B	70	74	parallel
Strand 5	B	230	234	parallel
Strand 6	B	453	458	parallel
Strand 7	B	37	41	parallel
Strand 8	B	477	480	parallel
Strand 9	B	758	759	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	251	first strand
Strand 2	B	432	437	anti-parallel
Strand 3	B	414	419	anti-parallel
Strand 4	B	350	352	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	567	569	first strand
Strand 2	B	594	599	parallel
Strand 3	B	534	539	parallel
Strand 4	B	617	621	parallel
Strand 5	B	675	679	parallel
Strand 6	B	490	497	parallel
Strand 7	B	708	709	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	188	first strand
Strand 2	I	163	165	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	67	first strand
Strand 2	D	106	108	anti-parallel
Strand 3	D	99	100	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	186	first strand
Strand 2	D	195	196	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	249	250	first strand
Strand 2	D	280	283	anti-parallel
Strand 3	D	271	272	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	431	433	first strand
Strand 2	D	441	443	anti-parallel
Strand 3	D	403	409	anti-parallel
Strand 4	G	4	11	anti-parallel
Strand 5	G	42	45	anti-parallel
Strand 6	G	36	37	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	113	121	first strand
Strand 2	E	102	110	anti-parallel
Strand 3	E	59	60	parallel
Strand 4	E	164	171	parallel
Strand 5	E	195	200	parallel
Strand 6	E	219	221	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	113	121	first strand
Strand 2	E	102	110	anti-parallel
Strand 3	E	63	66	parallel
Strand 4	E	164	171	parallel
Strand 5	E	195	200	parallel
Strand 6	E	219	221	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	303	304	first strand
Strand 2	E	311	312	anti-parallel
Strand 3	E	250	253	parallel
Strand 4	F	264	267	anti-parallel
Strand 5	F	274	275	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	289	290	first strand
Strand 2	E	297	298	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	332	335	first strand
Strand 2	E	356	359	anti-parallel
Strand 3	E	366	367	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	71	first strand
Strand 2	F	56	62	anti-parallel
Strand 3	F	9	16	parallel
Strand 4	F	158	165	parallel
Strand 5	F	190	195	parallel
Strand 6	F	214	216	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	253	254	first strand
Strand 2	F	261	262	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	24	first strand
Strand 2	H	58	59	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 28JM

Analysis of interatomic Contacts of Structural Units in PDB entry:
28JM