Analysis of interatomic Contacts of Structural Units in PDB entry:
28JQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 28JQ entry

There are 6 chains in PDB entry 28JQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 22	THR 809
B	GLU 27	ARG 392
C	ASP 28	LYS 344
D	GLU 25	SER 242
E	SER 21	ASN 113
F	ASP 28	MET 487

There are 56 helices in PDB entry 28JQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	46	Right-handed alpha
Helix 2	AA2	A	55	70	Right-handed alpha
Helix 3	AA3	A	106	118	Right-handed alpha
Helix 4	AA4	A	128	142	Right-handed alpha
Helix 5	AA5	A	189	196	Right-handed alpha
Helix 6	AA6	A	215	232	Right-handed alpha
Helix 7	AA7	A	280	287	Right-handed alpha
Helix 8	AA8	A	297	315	Right-handed alpha
Helix 9	AA9	A	362	368	Right-handed alpha
Helix 10	AB1	A	378	393	Right-handed alpha
Helix 11	AB2	A	449	452	Right-handed 310
Helix 12	AB3	A	542	553	Right-handed alpha
Helix 13	AB4	A	647	651	Right-handed 310
Helix 14	AB5	A	726	730	Right-handed 310
Helix 15	AB6	B	240	244	Right-handed 310
Helix 16	AB7	C	28	33	Right-handed 310
Helix 17	AB8	C	39	44	Right-handed 310
Helix 18	AB9	C	192	212	Right-handed alpha
Helix 19	AC1	C	247	261	Right-handed alpha
Helix 20	AC2	C	327	343	Right-handed alpha
Helix 21	AC3	D	31	46	Right-handed alpha
Helix 22	AC4	D	47	62	Right-handed alpha
Helix 23	AC5	D	67	82	Right-handed alpha
Helix 24	AC6	D	84	99	Right-handed alpha
Helix 25	AC7	D	104	121	Right-handed alpha
Helix 26	AC8	D	122	129	Right-handed alpha
Helix 27	AC9	D	138	154	Right-handed alpha
Helix 28	AD1	D	159	189	Right-handed alpha
Helix 29	AD2	D	190	205	Right-handed alpha
Helix 30	AD3	D	208	225	Right-handed alpha
Helix 31	AD4	D	227	241	Right-handed alpha
Helix 32	AD5	E	22	26	Right-handed 310
Helix 33	AD6	E	39	46	Right-handed alpha
Helix 34	AD7	E	51	60	Right-handed alpha
Helix 35	AD8	F	39	44	Right-handed alpha
Helix 36	AD9	F	45	63	Right-handed alpha
Helix 37	AE1	F	71	86	Right-handed alpha
Helix 38	AE2	F	118	124	Right-handed alpha
Helix 39	AE3	F	126	143	Right-handed alpha
Helix 40	AE4	F	144	149	Right-handed alpha
Helix 41	AE5	F	198	216	Right-handed alpha
Helix 42	AE6	F	220	236	Right-handed alpha
Helix 43	AE7	F	241	246	Right-handed alpha
Helix 44	AE8	F	249	263	Right-handed alpha
Helix 45	AE9	F	271	283	Right-handed alpha
Helix 46	AF1	F	293	302	Right-handed alpha
Helix 47	AF2	F	304	322	Right-handed alpha
Helix 48	AF3	F	324	339	Right-handed alpha
Helix 49	AF4	F	342	356	Right-handed alpha
Helix 50	AF5	F	358	367	Right-handed alpha
Helix 51	AF6	F	375	389	Right-handed alpha
Helix 52	AF7	F	391	406	Right-handed alpha
Helix 53	AF8	F	409	423	Right-handed alpha
Helix 54	AF9	F	425	439	Right-handed alpha
Helix 55	AG1	F	442	457	Right-handed alpha
Helix 56	AG2	F	461	486	Right-handed alpha

There are 22 sheets in PDB entry 28JQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	32	first strand
Strand 2	A	83	90	parallel
Strand 3	A	72	80	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	100	first strand
Strand 2	A	162	170	parallel
Strand 3	A	150	158	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	181	first strand
Strand 2	A	253	260	parallel
Strand 3	A	240	247	anti-parallel
Strand 4	B	192	194	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	276	first strand
Strand 2	A	334	342	parallel
Strand 3	A	323	329	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	349	first strand
Strand 2	A	411	420	parallel
Strand 3	A	353	355	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	349	first strand
Strand 2	A	411	420	parallel
Strand 3	A	395	404	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	441	first strand
Strand 2	A	455	462	anti-parallel
Strand 3	A	466	475	anti-parallel
Strand 4	A	484	494	anti-parallel
Strand 5	A	506	517	anti-parallel
Strand 6	A	523	537	anti-parallel
Strand 7	A	564	567	anti-parallel

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There are 15 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	444	447	first strand
Strand 2	A	455	462	anti-parallel
Strand 3	A	466	475	anti-parallel
Strand 4	A	484	494	anti-parallel
Strand 5	A	506	517	anti-parallel
Strand 6	A	523	537	anti-parallel
Strand 7	A	570	581	anti-parallel
Strand 8	A	590	600	anti-parallel
Strand 9	A	608	619	anti-parallel
Strand 10	A	628	640	anti-parallel
Strand 11	A	710	720	anti-parallel
Strand 12	A	733	745	anti-parallel
Strand 13	A	767	778	anti-parallel
Strand 14	A	781	792	anti-parallel
Strand 15	A	802	805	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	671	674	first strand
Strand 2	A	700	705	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	51	first strand
Strand 2	B	386	391	anti-parallel
Strand 3	B	377	381	anti-parallel
Strand 4	B	372	374	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	71	75	anti-parallel
Strand 3	B	80	85	anti-parallel
Strand 4	B	94	96	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	118	first strand
Strand 2	B	121	126	anti-parallel
Strand 3	B	130	135	anti-parallel
Strand 4	B	141	146	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	161	165	anti-parallel
Strand 3	B	171	175	anti-parallel
Strand 4	B	181	185	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	203	first strand
Strand 2	B	206	209	anti-parallel
Strand 3	B	215	220	anti-parallel
Strand 4	B	226	231	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	254	first strand
Strand 2	B	257	259	anti-parallel
Strand 3	B	266	271	anti-parallel
Strand 4	B	277	282	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	292	first strand
Strand 2	B	295	299	anti-parallel
Strand 3	B	305	309	anti-parallel
Strand 4	B	315	318	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	333	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	345	350	anti-parallel
Strand 4	B	356	361	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	234	first strand
Strand 2	C	240	244	anti-parallel
Strand 3	C	313	319	anti-parallel
Strand 4	C	301	306	anti-parallel
Strand 5	C	275	280	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	234	first strand
Strand 2	C	240	244	anti-parallel
Strand 3	C	313	319	anti-parallel
Strand 4	C	309	310	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	35	first strand
Strand 2	E	76	80	anti-parallel
Strand 3	E	87	95	anti-parallel
Strand 4	E	72	74	anti-parallel
Strand 5	E	64	65	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	35	first strand
Strand 2	E	76	80	anti-parallel
Strand 3	E	87	95	anti-parallel
Strand 4	E	101	107	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	95	96	first strand
Strand 2	F	113	116	parallel
Strand 3	F	106	109	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 28JQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
28JQ