Analysis of interatomic Contacts of Structural Units in PDB entry:
28JU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 28JU entry

There are 6 chains in PDB entry 28JU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ASP 28	LYS 344
D	GLU 25	SER 242
E	SER 21	ASN 113
B	SER 21	ARG 392
A	GLU 22	THR 809
F	ASP 28	MET 487

There are 60 helices in PDB entry 28JU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	29	33	Right-handed 310
Helix 2	AA2	C	39	44	Right-handed 310
Helix 3	AA3	C	115	127	Right-handed alpha
Helix 4	AA4	C	136	139	Right-handed 310
Helix 5	AA5	C	190	212	Right-handed alpha
Helix 6	AA6	C	214	218	Right-handed 310
Helix 7	AA7	C	248	263	Right-handed alpha
Helix 8	AA8	C	284	292	Right-handed alpha
Helix 9	AA9	C	327	342	Right-handed alpha
Helix 10	AB1	D	31	46	Right-handed alpha
Helix 11	AB2	D	47	62	Right-handed alpha
Helix 12	AB3	D	67	82	Right-handed alpha
Helix 13	AB4	D	84	99	Right-handed alpha
Helix 14	AB5	D	104	121	Right-handed alpha
Helix 15	AB6	D	122	129	Right-handed alpha
Helix 16	AB7	D	138	154	Right-handed alpha
Helix 17	AB8	D	159	189	Right-handed alpha
Helix 18	AB9	D	190	205	Right-handed alpha
Helix 19	AC1	D	208	225	Right-handed alpha
Helix 20	AC2	D	227	241	Right-handed alpha
Helix 21	AC3	E	22	26	Right-handed 310
Helix 22	AC4	E	39	46	Right-handed alpha
Helix 23	AC5	E	51	60	Right-handed alpha
Helix 24	AC6	B	240	244	Right-handed 310
Helix 25	AC7	A	38	46	Right-handed alpha
Helix 26	AC8	A	55	70	Right-handed alpha
Helix 27	AC9	A	106	118	Right-handed alpha
Helix 28	AD1	A	128	142	Right-handed alpha
Helix 29	AD2	A	189	196	Right-handed alpha
Helix 30	AD3	A	215	232	Right-handed alpha
Helix 31	AD4	A	280	287	Right-handed alpha
Helix 32	AD5	A	297	315	Right-handed alpha
Helix 33	AD6	A	362	368	Right-handed alpha
Helix 34	AD7	A	378	393	Right-handed alpha
Helix 35	AD8	A	449	452	Right-handed 310
Helix 36	AD9	A	542	553	Right-handed alpha
Helix 37	AE1	A	647	651	Right-handed 310
Helix 38	AE2	A	726	730	Right-handed 310
Helix 39	AE3	F	39	44	Right-handed alpha
Helix 40	AE4	F	45	64	Right-handed alpha
Helix 41	AE5	F	69	85	Right-handed alpha
Helix 42	AE6	F	118	124	Right-handed alpha
Helix 43	AE7	F	126	143	Right-handed alpha
Helix 44	AE8	F	144	151	Right-handed alpha
Helix 45	AE9	F	198	215	Right-handed alpha
Helix 46	AF1	F	220	236	Right-handed alpha
Helix 47	AF2	F	241	246	Right-handed alpha
Helix 48	AF3	F	249	263	Right-handed alpha
Helix 49	AF4	F	271	285	Right-handed alpha
Helix 50	AF5	F	293	303	Right-handed alpha
Helix 51	AF6	F	304	322	Right-handed alpha
Helix 52	AF7	F	324	339	Right-handed alpha
Helix 53	AF8	F	342	356	Right-handed alpha
Helix 54	AF9	F	358	368	Right-handed alpha
Helix 55	AG1	F	375	389	Right-handed alpha
Helix 56	AG2	F	391	406	Right-handed alpha
Helix 57	AG3	F	409	423	Right-handed alpha
Helix 58	AG4	F	425	440	Right-handed alpha
Helix 59	AG5	F	442	457	Right-handed alpha
Helix 60	AG6	F	461	486	Right-handed alpha

There are 25 sheets in PDB entry 28JU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	100	first strand
Strand 2	C	103	109	anti-parallel
Strand 3	C	171	183	anti-parallel
Strand 4	C	157	168	anti-parallel
Strand 5	C	146	148	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	135	first strand
Strand 2	C	140	142	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	270	first strand
Strand 2	C	275	278	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	307	first strand
Strand 2	C	316	319	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	35	first strand
Strand 2	E	76	80	anti-parallel
Strand 3	E	87	95	anti-parallel
Strand 4	E	72	74	anti-parallel
Strand 5	E	64	65	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	35	first strand
Strand 2	E	76	80	anti-parallel
Strand 3	E	87	95	anti-parallel
Strand 4	E	101	107	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	51	first strand
Strand 2	B	386	391	anti-parallel
Strand 3	B	377	381	anti-parallel
Strand 4	B	372	374	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	71	75	anti-parallel
Strand 3	B	80	85	anti-parallel
Strand 4	B	91	96	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	101	first strand
Strand 2	B	105	107	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	118	first strand
Strand 2	B	121	125	anti-parallel
Strand 3	B	130	135	anti-parallel
Strand 4	B	141	146	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	161	165	anti-parallel
Strand 3	B	170	175	anti-parallel
Strand 4	B	181	186	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	194	first strand
Strand 2	A	240	247	parallel
Strand 3	A	253	260	anti-parallel
Strand 4	A	176	181	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	203	first strand
Strand 2	B	206	209	anti-parallel
Strand 3	B	215	220	anti-parallel
Strand 4	B	225	231	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	254	first strand
Strand 2	B	257	261	anti-parallel
Strand 3	B	267	271	anti-parallel
Strand 4	B	277	281	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	292	first strand
Strand 2	B	295	299	anti-parallel
Strand 3	B	305	309	anti-parallel
Strand 4	B	315	319	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	333	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	345	350	anti-parallel
Strand 4	B	356	361	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	32	first strand
Strand 2	A	83	90	parallel
Strand 3	A	72	80	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	100	first strand
Strand 2	A	162	170	parallel
Strand 3	A	150	158	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	276	first strand
Strand 2	A	334	342	parallel
Strand 3	A	323	329	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	349	first strand
Strand 2	A	411	420	parallel
Strand 3	A	353	355	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	349	first strand
Strand 2	A	411	420	parallel
Strand 3	A	395	404	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	441	first strand
Strand 2	A	455	462	anti-parallel
Strand 3	A	466	475	anti-parallel
Strand 4	A	484	494	anti-parallel
Strand 5	A	506	517	anti-parallel
Strand 6	A	523	537	anti-parallel
Strand 7	A	564	567	anti-parallel

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There are 15 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	444	447	first strand
Strand 2	A	455	462	anti-parallel
Strand 3	A	466	475	anti-parallel
Strand 4	A	484	494	anti-parallel
Strand 5	A	506	517	anti-parallel
Strand 6	A	523	537	anti-parallel
Strand 7	A	570	581	anti-parallel
Strand 8	A	590	600	anti-parallel
Strand 9	A	608	619	anti-parallel
Strand 10	A	628	640	anti-parallel
Strand 11	A	710	720	anti-parallel
Strand 12	A	733	745	anti-parallel
Strand 13	A	767	778	anti-parallel
Strand 14	A	781	792	anti-parallel
Strand 15	A	802	805	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	671	674	first strand
Strand 2	A	700	705	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	95	99	first strand
Strand 2	F	113	117	parallel
Strand 3	F	106	109	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 28JU

Analysis of interatomic Contacts of Structural Units in PDB entry:
28JU