Analysis of interatomic Contacts of Structural Units in PDB entry:
28JV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 28JV entry

There are 14 chains in PDB entry 28JV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 42	PHE 780
B	MET 1	LEU 760
C	ASN 115	THR 548
D	LEU 9	SER 462
E	LYS 9	HIS 387
F	ASP 6	SER 292
G	VAL 2	LYS 71
H	GLU 64	LEU 140
I	PRO 162	LEU 940
J	SER 271	PRO 331
K	SER 98	LYS 168
L	T 5	C 23
L	T 25	A 38
M	T 11	A 45

There are161 helices in PDB entry 28JV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	93	104	Right-handed alpha
Helix 2	AA2	A	119	130	Right-handed alpha
Helix 3	AA3	A	132	144	Right-handed alpha
Helix 4	AA4	A	149	162	Right-handed alpha
Helix 5	AA5	A	181	190	Right-handed alpha
Helix 6	AA6	A	191	198	Right-handed alpha
Helix 7	AA7	A	277	287	Right-handed alpha
Helix 8	AA8	A	317	329	Right-handed alpha
Helix 9	AA9	A	330	332	Right-handed 310
Helix 10	AB1	A	345	358	Right-handed alpha
Helix 11	AB2	A	367	382	Right-handed alpha
Helix 12	AB3	A	410	415	Right-handed alpha
Helix 13	AB4	A	420	431	Right-handed alpha
Helix 14	AB5	A	443	446	Right-handed 310
Helix 15	AB6	A	453	458	Right-handed alpha
Helix 16	AB7	A	479	484	Right-handed alpha
Helix 17	AB8	A	492	498	Right-handed alpha
Helix 18	AB9	A	515	526	Right-handed alpha
Helix 19	AC1	A	529	536	Right-handed alpha
Helix 20	AC2	A	537	554	Right-handed alpha
Helix 21	AC3	A	564	574	Right-handed alpha
Helix 22	AC4	A	585	599	Right-handed alpha
Helix 23	AC5	A	632	642	Right-handed alpha
Helix 24	AC6	A	667	672	Right-handed alpha
Helix 25	AC7	A	677	684	Right-handed alpha
Helix 26	AC8	A	705	717	Right-handed alpha
Helix 27	AC9	A	774	780	Right-handed alpha
Helix 28	AD1	B	18	34	Right-handed alpha
Helix 29	AD2	B	48	63	Right-handed alpha
Helix 30	AD3	B	76	98	Right-handed alpha
Helix 31	AD4	B	126	139	Right-handed alpha
Helix 32	AD5	B	139	149	Right-handed alpha
Helix 33	AD6	B	155	164	Right-handed alpha
Helix 34	AD7	B	176	187	Right-handed alpha
Helix 35	AD8	B	190	199	Right-handed alpha
Helix 36	AD9	B	209	214	Right-handed alpha
Helix 37	AE1	B	214	219	Right-handed alpha
Helix 38	AE2	B	238	246	Right-handed alpha
Helix 39	AE3	B	253	274	Right-handed alpha
Helix 40	AE4	B	278	291	Right-handed alpha
Helix 41	AE5	B	296	301	Right-handed 310
Helix 42	AE6	B	325	345	Right-handed alpha
Helix 43	AE7	B	353	365	Right-handed alpha
Helix 44	AE8	B	368	374	Right-handed alpha
Helix 45	AE9	B	375	386	Right-handed alpha
Helix 46	AF1	B	394	408	Right-handed alpha
Helix 47	AF2	B	440	450	Right-handed alpha
Helix 48	AF3	B	465	472	Right-handed alpha
Helix 49	AF4	B	509	512	Right-handed 310
Helix 50	AF5	B	513	531	Right-handed alpha
Helix 51	AF6	B	542	556	Right-handed alpha
Helix 52	AF7	B	556	565	Right-handed alpha
Helix 53	AF8	B	574	591	Right-handed alpha
Helix 54	AF9	B	603	608	Right-handed alpha
Helix 55	AG1	B	611	616	Right-handed 310
Helix 56	AG2	B	630	643	Right-handed alpha
Helix 57	AG3	B	647	665	Right-handed alpha
Helix 58	AG4	B	681	685	Right-handed 310
Helix 59	AG5	B	686	691	Right-handed alpha
Helix 60	AG6	B	694	699	Right-handed alpha
Helix 61	AG7	B	709	725	Right-handed alpha
Helix 62	AG8	B	733	738	Right-handed alpha
Helix 63	AG9	B	740	745	Right-handed alpha
Helix 64	AH1	B	746	755	Right-handed alpha
Helix 65	AH2	C	116	121	Right-handed alpha
Helix 66	AH3	C	121	132	Right-handed alpha
Helix 67	AH4	C	138	143	Right-handed alpha
Helix 68	AH5	C	189	200	Right-handed alpha
Helix 69	AH6	C	200	215	Right-handed alpha
Helix 70	AH7	C	216	226	Right-handed alpha
Helix 71	AH8	C	241	261	Right-handed alpha
Helix 72	AH9	C	295	320	Right-handed alpha
Helix 73	AI1	C	347	357	Right-handed alpha
Helix 74	AI2	C	380	385	Right-handed alpha
Helix 75	AI3	C	397	413	Right-handed alpha
Helix 76	AI4	C	423	435	Right-handed alpha
Helix 77	AI5	C	457	478	Right-handed alpha
Helix 78	AI6	C	483	504	Right-handed alpha
Helix 79	AI7	C	509	516	Right-handed alpha
Helix 80	AI8	C	522	546	Right-handed alpha
Helix 81	AI9	D	18	23	Right-handed alpha
Helix 82	AJ1	D	24	26	Right-handed 310
Helix 83	AJ2	D	27	35	Right-handed alpha
Helix 84	AJ3	D	37	47	Right-handed alpha
Helix 85	AJ4	D	52	59	Right-handed alpha
Helix 86	AJ5	D	76	78	Right-handed 310
Helix 87	AJ6	D	79	93	Right-handed alpha
Helix 88	AJ7	D	111	123	Right-handed alpha
Helix 89	AJ8	D	132	136	Right-handed 310
Helix 90	AJ9	D	144	164	Right-handed alpha
Helix 91	AK1	D	172	182	Right-handed alpha
Helix 92	AK2	D	197	204	Right-handed alpha
Helix 93	AK3	D	207	222	Right-handed alpha
Helix 94	AK4	D	223	227	Right-handed 310
Helix 95	AK5	D	229	242	Right-handed alpha
Helix 96	AK6	D	255	269	Right-handed alpha
Helix 97	AK7	D	284	289	Right-handed alpha
Helix 98	AK8	D	321	329	Right-handed alpha
Helix 99	AK9	D	347	357	Right-handed alpha
Helix 100	AL1	D	363	371	Right-handed alpha
Helix 101	AL2	D	373	377	Right-handed 310
Helix 102	AL3	D	384	397	Right-handed alpha
Helix 103	AL4	D	414	429	Right-handed alpha
Helix 104	AL5	D	446	462	Right-handed alpha
Helix 105	AL6	E	17	22	Right-handed 310
Helix 106	AL7	E	68	73	Right-handed 310
Helix 107	AL8	E	79	99	Right-handed alpha
Helix 108	AL9	E	125	134	Right-handed alpha
Helix 109	AM1	E	135	137	Right-handed 310
Helix 110	AM2	E	144	157	Right-handed alpha
Helix 111	AM3	E	181	193	Right-handed alpha
Helix 112	AM4	E	205	215	Right-handed alpha
Helix 113	AM5	E	224	237	Right-handed alpha
Helix 114	AM6	E	314	319	Right-handed alpha
Helix 115	AM7	E	320	322	Right-handed 310
Helix 116	AM8	E	368	378	Right-handed alpha
Helix 117	AM9	E	382	387	Right-handed alpha
Helix 118	AN1	F	18	28	Right-handed alpha
Helix 119	AN2	F	33	52	Right-handed alpha
Helix 120	AN3	F	106	121	Right-handed alpha
Helix 121	AN4	F	132	151	Right-handed alpha
Helix 122	AN5	F	173	187	Right-handed alpha
Helix 123	AN6	F	200	211	Right-handed alpha
Helix 124	AN7	F	222	230	Right-handed alpha
Helix 125	AN8	F	234	240	Right-handed alpha
Helix 126	AN9	G	13	27	Right-handed alpha
Helix 127	AO1	G	49	62	Right-handed alpha
Helix 128	AO2	H	65	82	Right-handed alpha
Helix 129	AO3	H	92	112	Right-handed alpha
Helix 130	AO4	H	114	129	Right-handed alpha
Helix 131	AO5	H	131	140	Right-handed alpha
Helix 132	AO6	I	169	225	Right-handed alpha
Helix 133	AO7	I	226	237	Right-handed alpha
Helix 134	AO8	I	238	243	Right-handed alpha
Helix 135	AO9	I	245	249	Right-handed 310
Helix 136	AP1	I	250	265	Right-handed alpha
Helix 137	AP2	I	278	290	Right-handed alpha
Helix 138	AP3	I	294	307	Right-handed alpha
Helix 139	AP4	I	554	562	Right-handed alpha
Helix 140	AP5	I	581	586	Right-handed alpha
Helix 141	AP6	I	599	606	Right-handed alpha
Helix 142	AP7	I	614	631	Right-handed alpha
Helix 143	AP8	I	638	642	Right-handed 310
Helix 144	AP9	I	651	653	Right-handed 310
Helix 145	AQ1	I	686	693	Right-handed alpha
Helix 146	AQ2	I	713	721	Right-handed alpha
Helix 147	AQ3	I	722	727	Right-handed alpha
Helix 148	AQ4	I	734	736	Right-handed 310
Helix 149	AQ5	I	778	787	Right-handed alpha
Helix 150	AQ6	I	817	866	Right-handed alpha
Helix 151	AQ7	I	890	902	Right-handed alpha
Helix 152	AQ8	I	903	914	Right-handed alpha
Helix 153	AQ9	J	276	281	Right-handed alpha
Helix 154	AR1	J	282	295	Right-handed alpha
Helix 155	AR2	J	298	307	Right-handed alpha
Helix 156	AR3	J	310	318	Right-handed alpha
Helix 157	AR4	J	320	330	Right-handed alpha
Helix 158	AR5	K	99	114	Right-handed alpha
Helix 159	AR6	K	122	134	Right-handed alpha
Helix 160	AR7	K	138	150	Right-handed alpha
Helix 161	AR8	K	158	167	Right-handed alpha

There are 27 sheets in PDB entry 28JV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	D	333	337	parallel
Strand 3	D	342	345	anti-parallel
Strand 4	D	314	317	anti-parallel
Strand 5	D	307	309	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	87	first strand
Strand 2	A	113	117	anti-parallel
Strand 3	A	105	108	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	171	first strand
Strand 2	A	174	179	anti-parallel
Strand 3	A	268	272	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	295	first strand
Strand 2	A	333	334	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	391	first strand
Strand 2	A	405	409	parallel
Strand 3	A	361	365	parallel
Strand 4	A	435	441	parallel
Strand 5	A	460	467	parallel
Strand 6	A	336	339	parallel
Strand 7	A	487	490	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	579	580	first strand
Strand 2	A	604	607	parallel
Strand 3	A	558	561	parallel
Strand 4	A	622	625	parallel
Strand 5	A	657	664	parallel
Strand 6	A	505	512	parallel
Strand 7	A	687	690	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	175	first strand
Strand 2	B	106	108	parallel
Strand 3	B	204	208	parallel
Strand 4	B	70	74	parallel
Strand 5	B	230	234	parallel
Strand 6	B	453	458	parallel
Strand 7	B	38	41	parallel
Strand 8	B	477	480	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	252	first strand
Strand 2	B	432	437	anti-parallel
Strand 3	B	414	419	anti-parallel
Strand 4	B	350	352	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	491	494	first strand
Strand 2	B	676	679	parallel
Strand 3	B	617	620	parallel
Strand 4	B	535	539	parallel
Strand 5	B	595	599	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	188	first strand
Strand 2	I	163	165	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	67	first strand
Strand 2	D	107	110	anti-parallel
Strand 3	D	96	99	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	249	250	first strand
Strand 2	D	280	283	anti-parallel
Strand 3	D	271	272	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	431	433	first strand
Strand 2	D	441	443	anti-parallel
Strand 3	D	404	409	anti-parallel
Strand 4	G	4	11	anti-parallel
Strand 5	G	42	44	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	113	121	first strand
Strand 2	E	103	110	anti-parallel
Strand 3	E	60	66	parallel
Strand 4	E	166	171	parallel
Strand 5	E	195	200	parallel
Strand 6	E	219	221	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	303	304	first strand
Strand 2	E	311	312	anti-parallel
Strand 3	E	249	253	parallel
Strand 4	F	264	268	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	289	290	first strand
Strand 2	E	297	298	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	332	334	first strand
Strand 2	E	357	359	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	71	first strand
Strand 2	F	56	62	anti-parallel
Strand 3	F	8	16	parallel
Strand 4	F	157	164	parallel
Strand 5	F	190	195	parallel
Strand 6	F	214	216	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	266	267	first strand
Strand 2	I	291	292	parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	551	552	first strand
Strand 2	I	541	546	anti-parallel
Strand 3	I	531	536	anti-parallel
Strand 4	I	313	319	anti-parallel
Strand 5	I	568	573	anti-parallel
Strand 6	I	578	580	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	647	649	first strand
Strand 2	I	674	677	anti-parallel
Strand 3	I	666	669	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	657	659	first strand
Strand 2	I	681	683	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	696	697	first strand
Strand 2	I	738	739	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	705	707	first strand
Strand 2	I	730	732	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	759	760	first strand
Strand 2	I	793	794	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	771	773	first strand
Strand 2	I	812	814	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	797	798	first strand
Strand 2	I	805	806	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 28JV

Analysis of interatomic Contacts of Structural Units in PDB entry:
28JV