Analysis of interatomic Contacts of Structural Units in PDB entry:
28KE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 28KE entry

There are 12 chains in PDB entry 28KE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 43	PHE 780
B	MET 1	ARG 730
C	SER 397	THR 548
D	ARG 17	SER 462
E	THR 8	LYS 388
F	ASP 6	PHE 289
G	VAL 2	THR 69
H	PRO 66	LEU 140
I	GLY 889	LEU 940
N	TYR 102	LYS 272
L	C 1	A 21
M	G 31	G 49

There are129 helices in PDB entry 28KE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	92	104	Right-handed alpha
Helix 2	AA2	A	119	129	Right-handed alpha
Helix 3	AA3	A	132	144	Right-handed alpha
Helix 4	AA4	A	149	162	Right-handed alpha
Helix 5	AA5	A	181	191	Right-handed alpha
Helix 6	AA6	A	191	198	Right-handed alpha
Helix 7	AA7	A	276	287	Right-handed alpha
Helix 8	AA8	A	317	326	Right-handed alpha
Helix 9	AA9	A	346	358	Right-handed alpha
Helix 10	AB1	A	367	381	Right-handed alpha
Helix 11	AB2	A	409	414	Right-handed alpha
Helix 12	AB3	A	420	432	Right-handed alpha
Helix 13	AB4	A	443	446	Right-handed 310
Helix 14	AB5	A	448	457	Right-handed alpha
Helix 15	AB6	A	476	478	Right-handed 310
Helix 16	AB7	A	479	484	Right-handed alpha
Helix 17	AB8	A	492	499	Right-handed alpha
Helix 18	AB9	A	515	525	Right-handed alpha
Helix 19	AC1	A	529	536	Right-handed alpha
Helix 20	AC2	A	537	553	Right-handed alpha
Helix 21	AC3	A	564	576	Right-handed alpha
Helix 22	AC4	A	585	599	Right-handed alpha
Helix 23	AC5	A	632	641	Right-handed alpha
Helix 24	AC6	A	667	676	Right-handed alpha
Helix 25	AC7	A	677	684	Right-handed alpha
Helix 26	AC8	A	707	719	Right-handed alpha
Helix 27	AC9	A	774	780	Right-handed alpha
Helix 28	AD1	B	18	35	Right-handed alpha
Helix 29	AD2	B	46	63	Right-handed alpha
Helix 30	AD3	B	76	99	Right-handed alpha
Helix 31	AD4	B	126	138	Right-handed alpha
Helix 32	AD5	B	139	147	Right-handed alpha
Helix 33	AD6	B	155	165	Right-handed alpha
Helix 34	AD7	B	176	188	Right-handed alpha
Helix 35	AD8	B	190	199	Right-handed alpha
Helix 36	AD9	B	209	214	Right-handed alpha
Helix 37	AE1	B	239	247	Right-handed alpha
Helix 38	AE2	B	252	277	Right-handed alpha
Helix 39	AE3	B	278	289	Right-handed alpha
Helix 40	AE4	B	320	324	Right-handed 310
Helix 41	AE5	B	325	344	Right-handed alpha
Helix 42	AE6	B	353	366	Right-handed alpha
Helix 43	AE7	B	369	387	Right-handed alpha
Helix 44	AE8	B	394	408	Right-handed alpha
Helix 45	AE9	B	440	450	Right-handed alpha
Helix 46	AF1	B	465	471	Right-handed alpha
Helix 47	AF2	B	507	511	Right-handed 310
Helix 48	AF3	B	513	531	Right-handed alpha
Helix 49	AF4	B	541	555	Right-handed alpha
Helix 50	AF5	B	556	563	Right-handed alpha
Helix 51	AF6	B	573	590	Right-handed alpha
Helix 52	AF7	B	603	608	Right-handed alpha
Helix 53	AF8	B	630	645	Right-handed alpha
Helix 54	AF9	B	647	665	Right-handed alpha
Helix 55	AG1	B	681	685	Right-handed 310
Helix 56	AG2	B	686	692	Right-handed alpha
Helix 57	AG3	B	694	699	Right-handed alpha
Helix 58	AG4	B	700	701	Right-handed 310
Helix 59	AG5	B	702	706	Right-handed 310
Helix 60	AG6	B	709	725	Right-handed alpha
Helix 61	AG7	C	398	413	Right-handed alpha
Helix 62	AG8	C	423	435	Right-handed alpha
Helix 63	AG9	C	454	478	Right-handed alpha
Helix 64	AH1	C	483	516	Right-handed alpha
Helix 65	AH2	C	522	548	Right-handed alpha
Helix 66	AH3	D	18	25	Right-handed alpha
Helix 67	AH4	D	27	35	Right-handed alpha
Helix 68	AH5	D	37	46	Right-handed alpha
Helix 69	AH6	D	49	59	Right-handed alpha
Helix 70	AH7	D	68	73	Right-handed alpha
Helix 71	AH8	D	74	75	Right-handed 310
Helix 72	AH9	D	76	78	Right-handed 310
Helix 73	AI1	D	79	93	Right-handed alpha
Helix 74	AI2	D	111	123	Right-handed alpha
Helix 75	AI3	D	144	165	Right-handed alpha
Helix 76	AI4	D	172	182	Right-handed alpha
Helix 77	AI5	D	197	205	Right-handed alpha
Helix 78	AI6	D	207	222	Right-handed alpha
Helix 79	AI7	D	223	227	Right-handed 310
Helix 80	AI8	D	229	242	Right-handed alpha
Helix 81	AI9	D	255	269	Right-handed alpha
Helix 82	AJ1	D	284	289	Right-handed alpha
Helix 83	AJ2	D	321	331	Right-handed alpha
Helix 84	AJ3	D	347	358	Right-handed alpha
Helix 85	AJ4	D	360	371	Right-handed alpha
Helix 86	AJ5	D	373	379	Right-handed 310
Helix 87	AJ6	D	384	397	Right-handed alpha
Helix 88	AJ7	D	398	400	Right-handed 310
Helix 89	AJ8	D	414	429	Right-handed alpha
Helix 90	AJ9	D	446	462	Right-handed alpha
Helix 91	AK1	E	9	13	Right-handed 310
Helix 92	AK2	E	17	22	Right-handed 310
Helix 93	AK3	E	30	43	Right-handed alpha
Helix 94	AK4	E	68	72	Right-handed 310
Helix 95	AK5	E	79	99	Right-handed alpha
Helix 96	AK6	E	123	134	Right-handed alpha
Helix 97	AK7	E	144	157	Right-handed alpha
Helix 98	AK8	E	181	193	Right-handed alpha
Helix 99	AK9	E	205	215	Right-handed alpha
Helix 100	AL1	E	224	235	Right-handed alpha
Helix 101	AL2	E	272	276	Right-handed 310
Helix 102	AL3	E	314	319	Right-handed alpha
Helix 103	AL4	E	320	322	Right-handed 310
Helix 104	AL5	E	337	339	Right-handed 310
Helix 105	AL6	E	368	378	Right-handed alpha
Helix 106	AL7	E	382	388	Right-handed alpha
Helix 107	AL8	F	18	28	Right-handed alpha
Helix 108	AL9	F	33	52	Right-handed alpha
Helix 109	AM1	F	101	121	Right-handed alpha
Helix 110	AM2	F	132	148	Right-handed alpha
Helix 111	AM3	F	173	187	Right-handed alpha
Helix 112	AM4	F	200	211	Right-handed alpha
Helix 113	AM5	F	223	230	Right-handed alpha
Helix 114	AM6	F	234	239	Right-handed alpha
Helix 115	AM7	F	282	289	Right-handed alpha
Helix 116	AM8	G	13	26	Right-handed alpha
Helix 117	AM9	G	50	64	Right-handed alpha
Helix 118	AN1	H	67	82	Right-handed alpha
Helix 119	AN2	H	91	111	Right-handed alpha
Helix 120	AN3	H	114	129	Right-handed alpha
Helix 121	AN4	H	130	140	Right-handed alpha
Helix 122	AN5	I	890	902	Right-handed alpha
Helix 123	AN6	I	903	916	Right-handed alpha
Helix 124	AN7	I	935	939	Right-handed 310
Helix 125	AN8	N	115	120	Right-handed alpha
Helix 126	AN9	N	141	149	Right-handed alpha
Helix 127	AO1	N	151	156	Right-handed alpha
Helix 128	AO2	N	183	194	Right-handed alpha
Helix 129	AO3	N	199	235	Right-handed alpha

There are 25 sheets in PDB entry 28KE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	D	333	338	parallel
Strand 3	D	341	345	anti-parallel
Strand 4	D	314	317	anti-parallel
Strand 5	D	307	309	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	87	first strand
Strand 2	A	113	117	anti-parallel
Strand 3	A	105	108	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	171	first strand
Strand 2	A	174	178	anti-parallel
Strand 3	A	271	272	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	295	first strand
Strand 2	A	333	334	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	391	first strand
Strand 2	A	405	408	parallel
Strand 3	A	361	364	parallel
Strand 4	A	435	441	parallel
Strand 5	A	460	467	parallel
Strand 6	A	336	339	parallel
Strand 7	A	487	490	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	579	580	first strand
Strand 2	A	604	607	parallel
Strand 3	A	558	561	parallel
Strand 4	A	622	625	parallel
Strand 5	A	658	664	parallel
Strand 6	A	506	512	parallel
Strand 7	A	688	690	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	4	first strand
Strand 2	B	9	11	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	174	first strand
Strand 2	B	105	107	parallel
Strand 3	B	204	208	parallel
Strand 4	B	70	74	parallel
Strand 5	B	230	233	parallel
Strand 6	B	453	458	parallel
Strand 7	B	38	41	parallel
Strand 8	B	477	478	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	251	first strand
Strand 2	B	432	437	anti-parallel
Strand 3	B	414	419	anti-parallel
Strand 4	B	350	352	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	490	494	first strand
Strand 2	B	675	679	parallel
Strand 3	B	617	620	parallel
Strand 4	B	534	539	parallel
Strand 5	B	594	599	parallel
Strand 6	B	566	569	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	67	first strand
Strand 2	D	105	110	anti-parallel
Strand 3	D	96	101	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	186	first strand
Strand 2	D	195	196	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	249	250	first strand
Strand 2	D	280	283	anti-parallel
Strand 3	D	271	272	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	431	433	first strand
Strand 2	D	441	443	anti-parallel
Strand 3	D	402	409	anti-parallel
Strand 4	G	7	11	anti-parallel
Strand 5	G	42	45	anti-parallel
Strand 6	G	34	37	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	60	first strand
Strand 2	E	164	171	parallel
Strand 3	E	63	66	parallel
Strand 4	E	104	110	parallel
Strand 5	E	113	121	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	60	first strand
Strand 2	E	164	171	parallel
Strand 3	E	195	200	parallel
Strand 4	E	219	221	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	303	304	first strand
Strand 2	E	311	312	anti-parallel
Strand 3	E	249	253	parallel
Strand 4	F	264	268	anti-parallel
Strand 5	F	274	275	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	257	258	first strand
Strand 2	F	248	249	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	289	290	first strand
Strand 2	E	297	298	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	332	335	first strand
Strand 2	E	356	359	anti-parallel
Strand 3	E	366	367	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	69	first strand
Strand 2	F	56	62	anti-parallel
Strand 3	F	7	16	parallel
Strand 4	F	156	165	parallel
Strand 5	F	190	195	parallel
Strand 6	F	214	216	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	253	254	first strand
Strand 2	F	261	262	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	103	104	first strand
Strand 2	N	111	112	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	138	140	first strand
Strand 2	N	178	182	anti-parallel
Strand 3	N	165	167	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	246	251	first strand
Strand 2	N	256	261	anti-parallel
Strand 3	N	267	271	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 28KE

Analysis of interatomic Contacts of Structural Units in PDB entry:
28KE