Analysis of interatomic Contacts of Structural Units in PDB entry:
28LP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 28LP entry

There are 5 chains in PDB entry 28LP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 252ARG 379
B
 ASP 252ARG 379
C
 ASP 252ARG 379
D
 ASP 252ARG 379
E
 ASP 252ARG 379
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 28LP

There are 9 sheets in PDB entry 28LP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
253 260first strand
Strand 2
B
253 260parallel
Strand 3
A
253 260parallel
Strand 4
E
253 260parallel
Strand 5
D
253 260parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
263 268first strand
Strand 2
B
263 268parallel
Strand 3
A
263 268parallel
Strand 4
E
263 268parallel
Strand 5
D
263 268parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
274 310first strand
Strand 2
B
274 310parallel
Strand 3
A
274 310parallel
Strand 4
E
274 310parallel
Strand 5
D
274 310parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
313 314first strand
Strand 2
B
313 314parallel
Strand 3
A
313 314parallel
Strand 4
E
313 314parallel
Strand 5
D
313 314parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
317 321first strand
Strand 2
B
317 321parallel
Strand 3
A
317 321parallel
Strand 4
E
317 321parallel
Strand 5
D
317 321parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
328 330first strand
Strand 2
B
328 330parallel
Strand 3
A
328 330parallel
Strand 4
E
328 330parallel
Strand 5
D
328 330parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
336 354first strand
Strand 2
B
336 354parallel
Strand 3
A
336 354parallel
Strand 4
E
336 354parallel
Strand 5
D
336 354parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
360 362first strand
Strand 2
B
360 362parallel
Strand 3
A
360 362parallel
Strand 4
E
360 362parallel
Strand 5
D
360 362parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
369 378first strand
Strand 2
B
369 378parallel
Strand 3
A
369 378parallel
Strand 4
E
369 378parallel
Strand 5
D
369 378parallel
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