Analysis of interatomic Contacts of Structural Units in PDB entry:
28LW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 28LW entry

There are 2 chains in PDB entry 28LW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 36ASP 706
B
 ILE 36ASP 706
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 28LW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 77Right-handed alpha
Helix 2
AA2
A
81 89Right-handed alpha
Helix 3
AA3
A
91 105Right-handed alpha
Helix 4
AA4
A
108 117Right-handed alpha
Helix 5
AA5
A
120 126Right-handed alpha
Helix 6
AA6
A
151 188Right-handed alpha
Helix 7
AA7
A
196 208Right-handed alpha
Helix 8
AA8
A
215 233Right-handed alpha
Helix 9
AA9
A
239 246Right-handed alpha
Helix 10
AB1
A
247 257Right-handed alpha
Helix 11
AB2
A
263 275Right-handed alpha
Helix 12
AB3
A
282 301Right-handed alpha
Helix 13
AB4
A
302 314Right-handed alpha
Helix 14
AB5
A
324 328Right-handed 310
Helix 15
AB6
A
341 353Right-handed alpha
Helix 16
AB7
A
354 365Right-handed alpha
Helix 17
AB8
A
375 383Right-handed alpha
Helix 18
AB9
A
396 404Right-handed alpha
Helix 19
AC1
A
419 428Right-handed alpha
Helix 20
AC2
A
457 476Right-handed alpha
Helix 21
AC3
A
495 504Right-handed alpha
Helix 22
AC4
A
506 515Right-handed alpha
Helix 23
AC5
A
535 548Right-handed alpha
Helix 24
AC6
A
559 565Right-handed alpha
Helix 25
AC7
A
569 576Right-handed 310
Helix 26
AC8
A
577 584Right-handed alpha
Helix 27
AC9
A
596 598Right-handed 310
Helix 28
AD1
A
599 614Right-handed alpha
Helix 29
AD2
A
632 645Right-handed alpha
Helix 30
AD3
A
660 669Right-handed alpha
Helix 31
AD4
A
670 675Right-handed alpha
Helix 32
AD5
A
684 704Right-handed alpha
Helix 33
AD6
B
62 77Right-handed alpha
Helix 34
AD7
B
81 89Right-handed alpha
Helix 35
AD8
B
91 105Right-handed alpha
Helix 36
AD9
B
108 117Right-handed alpha
Helix 37
AE1
B
120 126Right-handed alpha
Helix 38
AE2
B
151 188Right-handed alpha
Helix 39
AE3
B
196 208Right-handed alpha
Helix 40
AE4
B
215 233Right-handed alpha
Helix 41
AE5
B
239 246Right-handed alpha
Helix 42
AE6
B
247 258Right-handed alpha
Helix 43
AE7
B
263 275Right-handed alpha
Helix 44
AE8
B
282 301Right-handed alpha
Helix 45
AE9
B
302 314Right-handed alpha
Helix 46
AF1
B
324 328Right-handed 310
Helix 47
AF2
B
341 353Right-handed alpha
Helix 48
AF3
B
354 364Right-handed alpha
Helix 49
AF4
B
375 383Right-handed alpha
Helix 50
AF5
B
393 395Right-handed 310
Helix 51
AF6
B
396 402Right-handed alpha
Helix 52
AF7
B
419 427Right-handed alpha
Helix 53
AF8
B
454 456Right-handed 310
Helix 54
AF9
B
457 476Right-handed alpha
Helix 55
AG1
B
495 504Right-handed alpha
Helix 56
AG2
B
506 515Right-handed alpha
Helix 57
AG3
B
535 548Right-handed alpha
Helix 58
AG4
B
558 565Right-handed alpha
Helix 59
AG5
B
569 575Right-handed 310
Helix 60
AG6
B
577 585Right-handed alpha
Helix 61
AG7
B
596 598Right-handed 310
Helix 62
AG8
B
599 615Right-handed alpha
Helix 63
AG9
B
632 645Right-handed alpha
Helix 64
AH1
B
660 669Right-handed alpha
Helix 65
AH2
B
670 675Right-handed alpha
Helix 66
AH3
B
684 704Right-handed alpha
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There are 10 sheets in PDB entry 28LW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 39first strand
Strand 2
A
45 47anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
137 138anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 323first strand
Strand 2
A
488 492anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 392first strand
Strand 2
A
369 374parallel
Strand 3
A
333 338parallel
Strand 4
A
408 411parallel
Strand 5
A
430 435parallel
Strand 6
A
444 448parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
591 595first strand
Strand 2
A
551 555parallel
Strand 3
A
521 525parallel
Strand 4
A
623 626parallel
Strand 5
A
649 651parallel
Strand 6
A
679 681parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 39first strand
Strand 2
B
45 47anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 129first strand
Strand 2
B
137 138anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
319 323first strand
Strand 2
B
488 492anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
388 392first strand
Strand 2
B
369 374parallel
Strand 3
B
333 338parallel
Strand 4
B
408 411parallel
Strand 5
B
430 433parallel
Strand 6
B
444 445parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
591 595first strand
Strand 2
B
550 555parallel
Strand 3
B
520 525parallel
Strand 4
B
623 626parallel
Strand 5
B
649 651parallel
Strand 6
B
679 681parallel
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